Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1877
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    28   1.3  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    27   4.0  
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe...    25   9.3  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    25   9.3  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   9.3  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 646 SILIVCIA--ISPGRRPLADPFYILTF 720
           SI+ +C A  +SP  RP A+PF  L++
Sbjct: 75  SIIAICFACLLSPSLRPYAEPFIFLSY 101


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 281 YNEVLKDTTTILWTRPIERLNNNIYTCL 198
           + +VLKDT   LW R ++    +++ CL
Sbjct: 204 FEKVLKDTNPSLWVRNVQLSFFSLFPCL 231


>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 451 HNEVEWKFSLKNDLNARTRTLLNSKWPTSNGRHF 350
           HN  +W+ SL +       +L N+   +S GR+F
Sbjct: 108 HNAPKWRSSLMDSEILHNPSLANTHLDSSKGRYF 141


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 598 VIRVARFIVYPVFNWRSILIVCIAI 672
           VI  A FI Y  ++WR +   CI+I
Sbjct: 247 VISAALFIKYTDYSWRFLFDPCISI 271


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 157 LPFPVSVASALCFCWARLRSQSYVLDFFLRTLEIS 53
           LPF V V +++ F + RL  + +  DFF R LE++
Sbjct: 724 LPFDVPVDNSVDFPYLRLFLEKHADDFF-RCLEVA 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,863
Number of Sequences: 5004
Number of extensions: 55931
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)