Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1877
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    31   1.4  
05_06_0137 + 25936516-25936606,25936716-25937268,25937436-259379...    28   7.3  
05_06_0136 + 25928152-25928659,25928767-25928899,25928987-259290...    28   9.6  

>11_06_0278 - 21854859-21855101,21855529-21855587,21855684-21855711,
            21855812-21856702,21856792-21857011,21857638-21857687,
            21863174-21863284,21863379-21863483,21863568-21863693,
            21863796-21865187
          Length = 1074

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 299  SSVHLKYNEVLKDTTTILWTRPIERLNNNIY 207
            SS+ + + EV+K+T  +LW  P ER    IY
Sbjct: 908  SSLRILHREVVKETRFVLWNAPKEREQGVIY 938


>05_06_0137 +
           25936516-25936606,25936716-25937268,25937436-25937932,
           25938030-25938090,25938411-25938482,25938563-25938634,
           25938730-25938810,25938918-25939081,25939174-25939442,
           25939531-25939657,25939778-25939846,25939944-25940136,
           25940232-25940733
          Length = 916

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 74  PPDPRDQLWSWWVSP 30
           P DP D++W  WVSP
Sbjct: 217 PDDPHDRIWMPWVSP 231


>05_06_0136 +
          25928152-25928659,25928767-25928899,25928987-25929058,
          25929150-25929221,25929507-25929670,25929760-25930025,
          25930115-25930241,25930599-25930667,25930765-25930957,
          25931053-25931299,25931342-25931470,25932367-25932654
          Length = 755

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 74 PPDPRDQLWSWWVSP 30
          P DPRD++W+ W SP
Sbjct: 5  PDDPRDRVWTPWDSP 19


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,561,056
Number of Sequences: 37544
Number of extensions: 349926
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)