Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1876X
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    27   1.4  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    27   1.8  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    25   5.5  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.5  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    25   5.5  
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p...    25   7.3  

>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +1

Query: 106 PVNNFNLTAYQGIWYEIPKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIMTASRSI*KGR 285
           P N F+  +YQ      P F + S       SA  K+  D +  KN H    SR I    
Sbjct: 489 PQNWFSSFSYQTPNSASPPFSSLSHTLP--ISALAKIGHDALNRKN-HASLPSRRIVYKP 545

Query: 286 PSSPTTPI--KPQS*QSLSSLEKY 351
           PSSP+TPI   P+  + + SL++Y
Sbjct: 546 PSSPSTPISMNPRP-KGILSLQQY 568


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 340 LEKYHAMDQFKSWRLTIITTPSLTTANTMTRKSLIKCSSGSSLETRSLKATLKLLSKF 513
           L   H +    + +L ++  P++  +      SL  C    S  T  L ++LKLLSKF
Sbjct: 343 LPHLHTLVNELTLKLFVVIPPAIILSFDSYLDSLNDCLLSESTHTGVLCSSLKLLSKF 400


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 373 SWRLTIITTPSLTTANTMTRKSL 441
           S+RL + T+P+L   N   RKSL
Sbjct: 175 SYRLQVYTSPNLLRVNAPCRKSL 197


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/53 (24%), Positives = 30/53 (56%)
 Frame = +3

Query: 351 SRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVE 509
           S + +++ ++ D NN A  +N +YD+   ++  F  ++ R K +E + ++  E
Sbjct: 161 SLEANLKAISKDSNNKA--HNNRYDESSLTNPEFSILVERLKSIEENLQSLQE 211


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 447 LDETFSCHRICSCKRWRSYYSQSP 376
           L E    H+ C+ K W   YS+ P
Sbjct: 439 LVEVILAHKNCTLKEWNQLYSEIP 462


>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 231 EGQERAYHDGVKKYIEGTAKLTDDANK 311
           EGQ  A   G  KY+E +AKL +  N+
Sbjct: 144 EGQVVAQKIGAYKYLECSAKLNEGVNE 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,783
Number of Sequences: 5004
Number of extensions: 39506
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)