Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1876X
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    40   0.001
05_04_0105 - 18026373-18026561,18027169-18027356,18027634-180276...    33   0.20 
02_04_0592 - 24171698-24172285                                         32   0.34 
03_01_0608 + 4471738-4472115                                           30   1.0  
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636...    29   1.8  
06_01_0048 + 436156-436406,436514-436693,436725-437133                 29   2.4  
03_05_0345 + 23325842-23325964,23326384-23326828,23326965-233271...    27   9.8  
01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918     27   9.8  

>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +1

Query: 100 LKPVNNFNLTAYQGIWYEIPKFPNESE-KNGKCSSAEYKLEGD-VVKVKN 243
           +K V N +L  Y G WYEI  FP+  + ++G  + A Y L GD  VKV N
Sbjct: 1   MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLN 50


>05_04_0105 -
           18026373-18026561,18027169-18027356,18027634-18027692,
           18027980-18028089,18028297-18028419
          Length = 222

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 115 NFNLTAYQGIWYEIPKFPNESEKNGK-CSSAEYKLEGDVVKVK 240
           NF +    G W   PK+  ES K GK    AEY  + D  KVK
Sbjct: 70  NFCIALCSGAWIVSPKWLKESFKKGKFVGEAEYVFQDDEFKVK 112


>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 97  ELKPVNNFNLTAYQGIWYEIPKFPNESE-KNGKCSSAEYKLEGD 225
           E+  V   ++  Y G WYEI   PN  + ++G+ + A Y L  D
Sbjct: 13  EMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPD 56



 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 258 GVKKYIEGTAKLTDDANKAAKLTVTF 335
           G + YI+GTA   D A+  AKL V F
Sbjct: 71  GKRDYIKGTAYKADPASDEAKLKVKF 96


>03_01_0608 + 4471738-4472115
          Length = 125

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -2

Query: 516 MKFRQQF*RRLQASCF*RGSRRTLDETFSCHRICSCKR 403
           +K R+   +RL+A+   RG  ++ DE F C R+C+ KR
Sbjct: 24  VKRRRDEEQRLKAA---RGREKSSDEVFVCERVCTSKR 58


>04_03_0673 -
           18562497-18563010,18563080-18563471,18563553-18563649,
           18563977-18564149,18564349-18564485,18564806-18564872
          Length = 459

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 109 VNNFNLTAYQGIWYEIPKFPNESEKNGKCSSAEYKLEGD 225
           V NFN+  + G WY I    N +     C   E+++EGD
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239


>06_01_0048 + 436156-436406,436514-436693,436725-437133
          Length = 279

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 24  HAQASATASARGGDC*SYSRRHLPRAQTGEQLQPDSL 134
           H +A+ATA  R GD    SRR  PR   G +L  D +
Sbjct: 59  HDEAAATARRRDGDDLHGSRRRPPRRDGGARLGNDGV 95


>03_05_0345 +
           23325842-23325964,23326384-23326828,23326965-23327188,
           23327665-23328171,23328482-23328742
          Length = 519

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/60 (25%), Positives = 23/60 (38%)
 Frame = +3

Query: 225 RGEGQERAYHDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAI 404
           R    E     G KK++           K AKL  T   GE   +G+    + D ++Y +
Sbjct: 148 RSTHDETTQSSGSKKFVRCQRASDSQRGKTAKLAETSSSGESGEEGTDSSTSEDESSYEL 207


>01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918
          Length = 250

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 249 YHDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDY 389
           + DG  K +E T   T+     AK+ VT   GE+  DG  + L+ D+
Sbjct: 189 WRDGNAKEMEVTLTQTE----MAKVVVTMTGGEVEDDGEAEDLSLDF 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,916,934
Number of Sequences: 37544
Number of extensions: 266505
Number of successful extensions: 805
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)