Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1876X
(547 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical pr... 35 0.044
AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated... 35 0.044
AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type chlo... 35 0.044
Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical pr... 29 2.9
AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopam... 29 2.9
U80024-7|AAW88409.1| 295|Caenorhabditis elegans Serpentine rece... 28 5.0
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 8.8
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 8.8
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 8.8
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 8.8
>Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical
protein R07B7.1 protein.
Length = 796
Score = 34.7 bits (76), Expect = 0.044
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +3
Query: 318 KLTVTFKFGEISRDGSVQVLATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 476
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated
chloride channelCLH-6 protein.
Length = 796
Score = 34.7 bits (76), Expect = 0.044
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +3
Query: 318 KLTVTFKFGEISRDGSVQVLATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 476
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type
chloride channel CLH-6 protein.
Length = 796
Score = 34.7 bits (76), Expect = 0.044
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +3
Query: 318 KLTVTFKFGEISRDGSVQVLATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 476
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical
protein K09G1.4b protein.
Length = 840
Score = 28.7 bits (61), Expect = 2.9
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 80 TKAPAPSS-NR*TTST*QLTKASGMKSRNFPTNPRRTANALQLNTNWKVTW*RSRTCIS* 256
T +P+ SS R TT+T + KAS + + PR + +L N N S C +
Sbjct: 380 TTSPSSSSCARTTTTTSAIPKASDEREFGNSSTPRSSLESLSENVNVITNDFVSENCTTF 439
Query: 257 RRQEVYRRDGQ 289
R+ Y D Q
Sbjct: 440 SRRSSYADDSQ 450
>AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopamine
receptor longvariant protein.
Length = 840
Score = 28.7 bits (61), Expect = 2.9
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 80 TKAPAPSS-NR*TTST*QLTKASGMKSRNFPTNPRRTANALQLNTNWKVTW*RSRTCIS* 256
T +P+ SS R TT+T + KAS + + PR + +L N N S C +
Sbjct: 380 TTSPSSSSCARTTTTTSAIPKASDEREFGNSSTPRSSLESLSENVNVITNDFVSENCTTF 439
Query: 257 RRQEVYRRDGQ 289
R+ Y D Q
Sbjct: 440 SRRSSYADDSQ 450
>U80024-7|AAW88409.1| 295|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 7 protein.
Length = 295
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 339 FGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVEIS 515
F + D VLA Y ++I Y+C + ++ + HQ F+ + + G +T V ++
Sbjct: 50 FYRLFLDVVYNVLAGAYMTFSILYSC-FTEEFREHQAFIVYIGFPLQTSGAIRTIVALA 107
>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
protein C09H6.1b protein.
Length = 1309
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 266 EVYRRDGQAHRRRQ*SRKANSHFQVWRNITRWISSS 373
E++ D + R+ +R++ +HFQ ++ RWI +S
Sbjct: 74 EMFEDDEEDTVSRRRTRRSTAHFQDYQEPDRWIENS 109
>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
protein C09H6.1a protein.
Length = 1311
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 266 EVYRRDGQAHRRRQ*SRKANSHFQVWRNITRWISSS 373
E++ D + R+ +R++ +HFQ ++ RWI +S
Sbjct: 74 EMFEDDEEDTVSRRRTRRSTAHFQDYQEPDRWIENS 109
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 85 GTCPELKPVNNFNLTAYQGIWYEIP-KFPNESEKNGKCSSAEYKLE 219
G L P N NL + + + + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 85 GTCPELKPVNNFNLTAYQGIWYEIP-KFPNESEKNGKCSSAEYKLE 219
G L P N NL + + + + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 85 GTCPELKPVNNFNLTAYQGIWYEIP-KFPNESEKNGKCSSAEYKLE 219
G L P N NL + + + + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 85 GTCPELKPVNNFNLTAYQGIWYEIP-KFPNESEKNGKCSSAEYKLE 219
G L P N NL + + + + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,598,707
Number of Sequences: 27780
Number of extensions: 221718
Number of successful extensions: 677
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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