Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1874
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    29   0.55 
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    26   5.1  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    25   8.9  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
 Frame = -2

Query: 338 LLSTKRNLADAVRLLNLAVGEATFVADTPMYKGS-PSSVS---PPGNAPG-GTLDPLVGT 174
           L S  + L +  ++L   + E T V    +   S P+S+S   PPGN PG   + P++  
Sbjct: 495 LQSKNKKLIEENKILQKRLSEYTSVIQASLTAPSQPASLSLLGPPGNTPGHRNVPPILKR 554

Query: 173 QLFGPPTKIWY*GFPCSIPPHGT*AQP*EGTSLP 72
              G P++  Y  FP +  PH   + P + +S P
Sbjct: 555 SSIGTPSQQAY--FPDA--PHNCHSVP-QNSSYP 583


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 678 HASLSRKKYINLIMPVYESR 737
           + SLS  KYIN + P YE R
Sbjct: 457 NTSLSYSKYINALQPWYEER 476


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 151 RSGIEAFHVQYHPMERKRNHEK 86
           R G+  F  +   +ERKR HEK
Sbjct: 114 RDGVSPFSPEGEGLERKREHEK 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,446,279
Number of Sequences: 5004
Number of extensions: 77668
Number of successful extensions: 200
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)