Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1874
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0927 - 22642670-22643023 35 0.081
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 31 1.3
12_02_0436 - 19076486-19076609,19076860-19076944,19077321-190774... 30 1.7
04_04_0609 - 26589389-26589793 29 5.3
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 28 7.1
03_02_0103 + 5640652-5641029,5641458-5641693,5642292-5642367,564... 28 7.1
10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708 28 9.3
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 28 9.3
01_05_0285 - 20382305-20382563,20383315-20384504 28 9.3
>07_03_0927 - 22642670-22643023
Length = 117
Score = 34.7 bits (76), Expect = 0.081
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = +1
Query: 52 HEGAT-IPGKLVPSHGCAYVP-WGGIEHGKPQY---QILVGGPNNWVPTSGSNVPPGAFP 216
HEG IPG G YVP G++H P Q L G + WVP G VP P
Sbjct: 53 HEGTVLIPGLGRFELGSTYVPDITGVDHSVPAAEHGQFLPGADDTWVPNPGFEVPNPFQP 112
Query: 217 GGET 228
G +
Sbjct: 113 GSSS 116
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/96 (28%), Positives = 33/96 (34%), Gaps = 7/96 (7%)
Frame = -2
Query: 281 GEATFVADTPMYKGSPSSVSPPGNAPGGTLDPLVGTQLFGPPTKIWY*GFPC-------S 123
G++ FV D P + P PP P T P PP +W P S
Sbjct: 115 GDSPFV-DAPEHISPPPPPPPPARTPMPTPTPTPTPTPTRPPVPVWAAPLPARTPTPTPS 173
Query: 122 IPPHGT*AQP*EGTSLPGIVAPS*TARATYRGSPEQ 15
PP P GT P + PS T + G Q
Sbjct: 174 APPRAAAPSP-AGTPSPSPIPPSSTPVSALSGPLRQ 208
>12_02_0436 -
19076486-19076609,19076860-19076944,19077321-19077486,
19078213-19078889,19079372-19079475,19079582-19079817
Length = 463
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 118 GIEHGKPQYQILVGGPNNWVPTS--GSNVPPGAFPGGETEDGE-PLYIGVSATKVASPTA 288
G + P+ ++V + P S S P + GG E PL+ S ++A+ T
Sbjct: 20 GAKRSNPESLLVVTADISATPLSFPSSPSPVTSSTGGGVESSALPLW-EYSGDELAAATG 78
Query: 289 RFNSLTASAKFRLVDRSLDSR 351
RF+ + + K RLV R L +R
Sbjct: 79 RFHDILSEEKMRLVCRDLRAR 99
>04_04_0609 - 26589389-26589793
Length = 134
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 181 TSGSNVPPGAFPGGETEDGEPLYIGVSATKVASPTARFNSLTASAKF 321
T S +P A GG+ +G L + V + P R +LTA A F
Sbjct: 2 TGSSWLPSSAARGGDKGEGGKLVVAVIDSGPEPPLRRLANLTAGASF 48
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 28.3 bits (60), Expect = 7.1
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = -2
Query: 281 GEATFVADTPMYKGSPSSVSPPGNAPGGTLDPLVGTQLFGPPTKIWY*GFPCSIPPHGT* 102
G+ A P S +PP APG P G Q + PP P IPP GT
Sbjct: 437 GQPPPYASYPPPPPGSSMYNPPPPAPGQATPPPYGVQ-YAPP--------PAPIPPPGT- 486
Query: 101 AQP*EGTS--LPGIVAPS 54
A +G PG+ PS
Sbjct: 487 APSTDGAQNYPPGVTPPS 504
>03_02_0103 +
5640652-5641029,5641458-5641693,5642292-5642367,
5642450-5642526,5642672-5642702,5642798-5642950,
5643259-5643300,5643372-5643440,5643645-5643752
Length = 389
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 323 RNLADAVRLLNLAVGEATFVADTPMYKGSPSSVSPPGNAPGG 198
R L V L VG+ T +T + GS S+++PP N GG
Sbjct: 292 RFLPSIVAAACLFVGKFTLNPNTRPWFGSVSTITPPENIKGG 333
>10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708
Length = 567
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 308 AVRLLNLAVGEATFVADTPMYKGSPSSVS 222
A+ L LAV A F A TP Y+ P+S S
Sbjct: 189 ALPTLGLAVSIAIFTAGTPFYRHKPTSGS 217
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +1
Query: 157 GGPNNWVPTSGSNVPPGAFPGGETEDGEPLYIGVSATKVASPTARFNSLTASAKFRLVDR 336
G + +VPTS + P A P E P Y+ A + A+ + ++ AS +
Sbjct: 522 GQQDIFVPTSSHSEVPPANPSVHPEQAVPSYVSSQAPQPAAAGPQTHAAPASFASQAPPT 581
Query: 337 SLDSRTTKSSCP 372
S S+ ++ P
Sbjct: 582 SFASQAPQAGAP 593
>01_05_0285 - 20382305-20382563,20383315-20384504
Length = 482
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 204 WRDVGSTXRNPVVWAAY*DLVLRLSMFNTTPWNVS 100
W +VGS V+ AY +VLRL + T W V+
Sbjct: 179 WANVGSAAAQVVMPVAYDAVVLRLGVPVTVAWRVT 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,672,114
Number of Sequences: 37544
Number of extensions: 529816
Number of successful extensions: 1407
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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