Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1874
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.2
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 8.3
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 8.3
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 8.3
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 8.3
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 8.3
L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen prote... 28 8.3
AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ... 28 8.3
AF000299-3|AAW88403.1| 342|Caenorhabditis elegans Serpentine re... 28 8.3
AF000299-2|AAC47981.2| 324|Caenorhabditis elegans Serpentine re... 28 8.3
AC024790-11|AAF60631.1| 199|Caenorhabditis elegans Hypothetical... 28 8.3
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.7 bits (66), Expect = 1.2
Identities = 30/78 (38%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = -2
Query: 242 GSPSSVSPPGNAPGG-TLDPLVGTQLFGPPTKIWY*GF-PCSIPPHGT*AQP*EGTSLPG 69
G+P S PP PGG P G +GPP GF P PP G P G + P
Sbjct: 418 GAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPT----GFPPVGAPPPGAAGAP--GGN-PF 470
Query: 68 IVAPS*TARATYRGSPEQ 15
PS T YR SP Q
Sbjct: 471 ARGPSATG---YRQSPYQ 485
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/58 (37%), Positives = 25/58 (43%)
Frame = -2
Query: 242 GSPSSVSPPGNAPGGTLDPLVGTQLFGPPTKIWY*GFPCSIPPHGT*AQP*EGTSLPG 69
G P PPG+A G D G Q GPP + G P + P G P G LPG
Sbjct: 224 GPPGPGGPPGDAGGAGSDGAPGPQ--GPPGQD---GTPGNAGPDGQPGSP-GGPGLPG 275
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.9 bits (59), Expect = 8.3
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = -2
Query: 257 TPMYKGSPSSVSPPGNAPGGTLDPLVGTQ-LFGPPTKIWY*GFPCSIPPHGT*AQP*EGT 81
T Y G+P P GN G L G + L GP G P + G +
Sbjct: 385 TDGYPGAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDGGIPGAPGVSGP-------S 437
Query: 80 SLPGIVAPS*TARATYRGSPEQSCP 6
+PG+ P YRG+P QS P
Sbjct: 438 GIPGLPGPK--GEPGYRGTPGQSIP 460
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.9 bits (59), Expect = 8.3
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = -2
Query: 257 TPMYKGSPSSVSPPGNAPGGTLDPLVGTQ-LFGPPTKIWY*GFPCSIPPHGT*AQP*EGT 81
T Y G+P P GN G L G + L GP G P + G +
Sbjct: 384 TDGYPGAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDGGIPGAPGVSGP-------S 436
Query: 80 SLPGIVAPS*TARATYRGSPEQSCP 6
+PG+ P YRG+P QS P
Sbjct: 437 GIPGLPGPK--GEPGYRGTPGQSIP 459
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.9 bits (59), Expect = 8.3
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = -2
Query: 257 TPMYKGSPSSVSPPGNAPGGTLDPLVGTQ-LFGPPTKIWY*GFPCSIPPHGT*AQP*EGT 81
T Y G+P P GN G L G + L GP G P + G +
Sbjct: 384 TDGYPGAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDGGIPGAPGVSGP-------S 436
Query: 80 SLPGIVAPS*TARATYRGSPEQSCP 6
+PG+ P YRG+P QS P
Sbjct: 437 GIPGLPGPK--GEPGYRGTPGQSIP 459
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.9 bits (59), Expect = 8.3
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = -2
Query: 257 TPMYKGSPSSVSPPGNAPGGTLDPLVGTQ-LFGPPTKIWY*GFPCSIPPHGT*AQP*EGT 81
T Y G+P P GN G L G + L GP G P + G +
Sbjct: 385 TDGYPGAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDGGIPGAPGVSGP-------S 437
Query: 80 SLPGIVAPS*TARATYRGSPEQSCP 6
+PG+ P YRG+P QS P
Sbjct: 438 GIPGLPGPK--GEPGYRGTPGQSIP 460
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.9 bits (59), Expect = 8.3
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = -2
Query: 257 TPMYKGSPSSVSPPGNAPGGTLDPLVGTQ-LFGPPTKIWY*GFPCSIPPHGT*AQP*EGT 81
T Y G+P P GN G L G + L GP G P + G +
Sbjct: 421 TDGYPGAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDGGIPGAPGVSGP-------S 473
Query: 80 SLPGIVAPS*TARATYRGSPEQSCP 6
+PG+ P YRG+P QS P
Sbjct: 474 GIPGLPGPK--GEPGYRGTPGQSIP 496
>L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen protein
90 protein.
Length = 305
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = +1
Query: 124 EHGKPQYQILVGGPNNWVPTSGSNVPPGAFPGGETEDGEPLYIGVSATKVASPTARFNSL 303
+HG+P Q GP T GSN A+PG + GEP +G A P AR +S
Sbjct: 227 KHGEPG-QDGEEGPKGAPGTPGSN-GRDAYPGQPGKAGEPGAVGKDANYCPCP-ARRDSK 283
Query: 304 TAS 312
T S
Sbjct: 284 TES 286
>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
protein C33E10.6 protein.
Length = 1014
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 542 KNSHENNPPSAFFAANQK-SRYETCIIMNTSFEINNYFVYF 423
K+ H+ + F+ N K + +TC +MNT F+ Y +++
Sbjct: 680 KDIHDLHNDFPFYPQNTKVNNQKTCKLMNTLFDKEKYVIHY 720
>AF000299-3|AAW88403.1| 342|Caenorhabditis elegans Serpentine
receptor, class z protein24, isoform a protein.
Length = 342
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 44 VLFTKVPRSLVNSFLLMVALTFHGVVL 124
++FT + S+VNS+L+ LT G++L
Sbjct: 94 IIFTVISTSVVNSWLIFSILTITGLIL 120
>AF000299-2|AAC47981.2| 324|Caenorhabditis elegans Serpentine
receptor, class z protein24, isoform b protein.
Length = 324
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 44 VLFTKVPRSLVNSFLLMVALTFHGVVL 124
++FT + S+VNS+L+ LT G++L
Sbjct: 94 IIFTVISTSVVNSWLIFSILTITGLIL 120
>AC024790-11|AAF60631.1| 199|Caenorhabditis elegans Hypothetical
protein Y47D7A.12 protein.
Length = 199
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 163 PNNWVPTSGSNVPPGAFPGGETEDGEPLYIGVSATKVASPT 285
P N P + +PP P G + D + V+A+ A PT
Sbjct: 57 PQNSAPVTAPPLPPPPAPSGYSSDDASVTSNVAASPPAPPT 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,237,290
Number of Sequences: 27780
Number of extensions: 453786
Number of successful extensions: 1206
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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