Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1873
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 35 0.015
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 34 0.027
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 32 0.11
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 31 0.14
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 31 0.14
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 31 0.25
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 31 0.25
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 30 0.33
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 30 0.33
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 30 0.33
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.33
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 30 0.43
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.57
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 29 0.57
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 29 0.57
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 29 0.76
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 29 0.76
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 29 1.0
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 1.0
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.8
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 28 1.8
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.8
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 2.3
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 27 2.3
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 27 3.1
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 27 3.1
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 4.0
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 4.0
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 27 4.0
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 27 4.0
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 5.4
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 26 5.4
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 5.4
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 5.4
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 26 5.4
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 26 7.1
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 7.1
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 26 7.1
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 25 9.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.4
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 9.4
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 9.4
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 9.4
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 25 9.4
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 9.4
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 9.4
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 25 9.4
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 9.4
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 34.7 bits (76), Expect = 0.015
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +3
Query: 264 EEVTSTEPKESPV---KKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENG 434
+ +S EP + V KKS K+ ++ES + + ++ S +E+ +E + +SE+
Sbjct: 59 KRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESS 118
Query: 435 DATEKKETGVK 467
+ ++E VK
Sbjct: 119 SSESEEEVIVK 129
Score = 34.3 bits (75), Expect = 0.020
Identities = 20/81 (24%), Positives = 41/81 (50%)
Frame = +3
Query: 267 EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATE 446
E +S+E +E + K+ KK ++ES+ +E E++ + + +ES+ S + ++
Sbjct: 116 ESSSSESEEEVIVKTEEKKESSSESSSSSESEEE--EEAVVKIEEKKESSSDSSSESSSS 173
Query: 447 KKETGVKRKSVALDEETAEKT 509
+ E+ +EE EKT
Sbjct: 174 ESESESSSSESEEEEEVVEKT 194
Score = 30.7 bits (66), Expect = 0.25
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +3
Query: 276 STEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESND-ASENGDATEKK 452
S+ S +S + E+ E T+E E S + D+E S+D +SE+GD+
Sbjct: 166 SSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSS 225
Query: 453 ETGVKRKSVALDEETAE 503
++ + S + AE
Sbjct: 226 DSESESSSEDEKKRKAE 242
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +3
Query: 264 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDAT 443
E V TE K+ +S + E++ + E+G ++ DS +E+ +E +E A+
Sbjct: 189 EVVEKTEEKKEGSSESSSDS-ESSSDSSSESGDSDSSSDSESESSSEDEKKRKAE--PAS 245
Query: 444 EKKETGVKRKS 476
E++ + + S
Sbjct: 246 EERPAKITKPS 256
Score = 26.2 bits (55), Expect = 5.4
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Frame = +3
Query: 237 SRRQEGVAPEEVTSTEPKESPVKK-SPAKKV--EAAESNGKENG-TDEAPEDSPAENGDA 404
+++ + + V T K+ ++K S +KK+ EAA+ K++ TD +P+ S E A
Sbjct: 2 AKKDKTSVKKSVKETASKKGAIEKPSKSKKITKEAAKEIAKQSSKTDVSPKKSKKEAKRA 61
Query: 405 EESNDASENGDATEKKETGVKRKSVALDEETAEKT 509
+ E + KK+ K+K + E +E +
Sbjct: 62 S----SPEPSKKSVKKQKKSKKKEESSSESESESS 92
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 33.9 bits (74), Expect = 0.027
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Frame = +3
Query: 231 RRSRRQEGVAPEEVTSTEPKESPVKKSPAKKVE-----AAESNGKENGTDEAPEDSPAEN 395
RRS ++ +P V S P++SPV+ V+ +ESN K +GT+ + +P N
Sbjct: 161 RRSPKRNHRSPSPV-SFAPQKSPVENETETNVDNGDTKISESNEK-SGTEVEQQSAPNSN 218
Query: 396 GDAEESNDASENGDATEKKETGVKRKSVALDEETAEK 506
G+ EE N+ G E K+ K ++ + +E E+
Sbjct: 219 GN-EEVNNLEPVGQ-NESKQEPPKEENSNVSQEQPEQ 253
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/60 (23%), Positives = 35/60 (58%)
Frame = +3
Query: 264 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDAT 443
E +S+E +S S ++ +++ + + + ++ +DS +++ D+ ES +SE+ D+T
Sbjct: 244 ESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDS-ESESSSEDSDST 302
Score = 30.3 bits (65), Expect = 0.33
Identities = 14/74 (18%), Positives = 32/74 (43%)
Frame = +3
Query: 237 SRRQEGVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 416
S ++ + + +E + S + +ES G+D + S +E+ + E N
Sbjct: 121 SSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDN 180
Query: 417 DASENGDATEKKET 458
D+S + +E + +
Sbjct: 181 DSSSSSSDSESESS 194
Score = 30.3 bits (65), Expect = 0.33
Identities = 14/74 (18%), Positives = 32/74 (43%)
Frame = +3
Query: 237 SRRQEGVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 416
S ++ + + +E + S + +ES G+D + S +E+ + E N
Sbjct: 175 SSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDN 234
Query: 417 DASENGDATEKKET 458
D+S + +E + +
Sbjct: 235 DSSSSSSDSESESS 248
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 31.5 bits (68), Expect = 0.14
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 294 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDA 440
+P+K+ PAK ++ + A SPA NG N+AS + A
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEASPSSRA 161
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 31.5 bits (68), Expect = 0.14
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +3
Query: 249 EGVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN-GDAEESNDAS 425
E V ++TS EPK + KSP +K + ++ T++ DS +N ++S DA
Sbjct: 973 EQVDSAQLTS-EPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDNVATVDKSTDAV 1031
Query: 426 ENGDATEKKETGVKRKSVALDEETAEKT 509
+ AT T + + +E+ E++
Sbjct: 1032 DTSTATVAATTTTAEEELP-QKESQERS 1058
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 30.7 bits (66), Expect = 0.25
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +3
Query: 225 NGRRSRRQEGVAPEEVTSTEPKESPVK--KSPAKKVEAAESNGKENGTDEAPEDSPAENG 398
+G S G+ ++ + P K K ++KVE E+ + +EA ++ ++
Sbjct: 362 SGTSSISSSGILESSPATSISVDEPQKDSKDDSEKVEK-ETEVERKEENEAEAEAVFDDW 420
Query: 399 DA--EESNDASENGDATEKKETGVKRKSV 479
+A EE A N TEKKET +K +V
Sbjct: 421 EAALEEPEVAENNEVVTEKKETDIKSDAV 449
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 30.7 bits (66), Expect = 0.25
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +3
Query: 297 PVKKSPAKKVEAAESNGKENGTDE-APEDSPAENGDAEESNDASENGDATEKKETGV--- 464
PVKK P+KK + A++N E DE + E+ E+ + + + A+ K
Sbjct: 72 PVKKKPSKKSKKAKANAFEAFADEQSVEEEEEEDSEKPVRKNKKSSKKASPKNAFDALAD 131
Query: 465 KRKSVALDEETAEKT 509
++LDEE +E +
Sbjct: 132 DMDDLSLDEEESESS 146
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/71 (22%), Positives = 35/71 (49%)
Frame = +3
Query: 237 SRRQEGVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 416
S E P++ ++S +++ E ES +DE+ +S +E+ ++EE +
Sbjct: 62 SEESEVEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESESES-ESEEES 120
Query: 417 DASENGDATEK 449
++ E D +E+
Sbjct: 121 ESEEESDESER 131
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 30.3 bits (65), Expect = 0.33
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +3
Query: 282 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAE---ESNDASENGDATEKK 452
E +S + S + +A S+ +E ++E ED+ E+G +E E ++ E+ D E+K
Sbjct: 939 EGDDSVEEVSEYEASDADPSDEEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELERK 998
Query: 453 ETGVKRKSVALDEETAEK 506
K A +E ++K
Sbjct: 999 ARQEDAKHDAFEERPSKK 1016
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 30.3 bits (65), Expect = 0.33
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 327 EAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 437
E++E + ++N TDEA ED+ + D + S + D
Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSD 391
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.3 bits (65), Expect = 0.33
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 288 KESPVKKSPAK-KVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGV 464
K PV++ P K + ++ NG+E T + E++ + G ++E N+A+ + + GV
Sbjct: 123 KARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESAKGSSDE-NEANTATAPSSNEANGV 181
Query: 465 KRK 473
+K
Sbjct: 182 DKK 184
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 29.9 bits (64), Expect = 0.43
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +3
Query: 312 PAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVALDE 491
PA+ E +N +N +E + P +N + E ND+SE E+ E V+ + DE
Sbjct: 22 PAENGEG--TNVDDNNNEEEKDGIPLDNDNDE--NDSSEESATDEEAERQVREGFIVEDE 77
Query: 492 E 494
E
Sbjct: 78 E 78
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 381 SPAENGDAEESNDASENGDAT--EKKETGVKRKSVALDEETAE 503
SP NGD E +ENG+ T + ++ + LD + E
Sbjct: 9 SPTTNGDKNEDGYPAENGEGTNVDDNNNEEEKDGIPLDNDNDE 51
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 29.5 bits (63), Expect = 0.57
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +3
Query: 270 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 437
+ +EP + K+ K + +E+ + G D+ E+ ++ D +E D E+ +
Sbjct: 169 IQPSEPHDVDTSKNGLSKKQHSEAQPEVQGNDDEVEEEDDDDDDEDEDEDEDEDNN 224
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 29.5 bits (63), Expect = 0.57
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +3
Query: 264 EEVTSTEPKESPVKKSPAKKVEA--AESNGKENGTDEAPEDSPAENGDAEESNDASENGD 437
+E + KES K++PA+K + A NG E G A + D EE N D
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKE-DGEEGGKRKRNQD 111
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.5 bits (63), Expect = 0.57
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = +3
Query: 210 NLPCNNGRRSRRQEGVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 389
N+ + S +QE + + S ++ +PA + S + N E P PA
Sbjct: 363 NIKADQPENSTKQENPEEDMQIKDAEEHSNLESTPAAQ---QTSEVEANNHQEKPSSLPA 419
Query: 390 -ENGDAEESNDASEN-GDATEKKETGVKRKSVALDEET 497
E + E N+ E G EK+E +S+ EET
Sbjct: 420 VEQINVNEENNTPETEGLEDEKEENNTAAESLINQEET 457
Score = 28.7 bits (61), Expect = 1.0
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = +3
Query: 246 QEGVAP-EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE----NGDAEE 410
QEG A EEV +K+ A + KEN D+ P + AE NG EE
Sbjct: 494 QEGPATNEEVEKNNANSENANGLTDEKIIEAPLDTKENSDDDKPSPAAAEDIGTNGAIEE 553
Query: 411 SNDASENGDATEKKETGVKRKSVALDEE 494
SE + + T ++ ALD+E
Sbjct: 554 IPQVSEVLEPEKAHTTNLQLN--ALDKE 579
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 29.1 bits (62), Expect = 0.76
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 333 AESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVALDEE 494
+ES ++ DE E+ EN D + D +EN + + E G S A+ E
Sbjct: 241 SESYERDEDVDEEEEEDDDENNDEGDDEDENENDEL--RSENGSPNPSAAVINE 292
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 29.1 bits (62), Expect = 0.76
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 348 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVALDEETAEK 506
+EN +D E+S + AE A E TE++E K++ + L E ++
Sbjct: 625 EENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARKKEELRLRFEEEDR 677
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 306 KSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKR 470
K P+ K + S+ +NG+D DS + N SN +EN +A ++K + R
Sbjct: 963 KDPSPKSASESSSFYQNGSDIDDNDSNSSN----TSNHTTENANAQQRKLEDLNR 1013
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 267 EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENG 434
EV++ EP+ PVK+ V ++ G+ + TD +P E + S + E G
Sbjct: 389 EVSANEPQPRPVKED----VPKSQVGGETDTTDVINNSTPKEETEESPSTELPETG 440
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 336 ESNGKENG-TDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVALDEETAEK 506
E G +N E ED A N + E +AS +T+ ET ++DE AEK
Sbjct: 49 EPTGNDNTQVVENTEDISASNVVSAEGAEASTGDASTQSPETSENVVKNSVDESVAEK 106
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 243 RQEGVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 416
R VAP +TS + V KS VE+ +++ T PED P+ ++N
Sbjct: 284 RSTSVAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQT-PIPEDVPSPMDTLSQAN 340
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 473 FPLHTSLFLFCGITVLRCIVAFFGITIFS 387
FP+ +F FC + IV+ G+TIF+
Sbjct: 398 FPIGIFMFAFCSKVHIHYIVSLIGLTIFN 426
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 261 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEES 413
PE ++PKES ++ P+K+ E + + +E + +N EE+
Sbjct: 430 PEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEET 480
Score = 26.6 bits (56), Expect = 4.0
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +3
Query: 216 PCNNGRRSRRQEGVAPE-EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 392
P + + S ++ + E EV T P S V++ P+KK + +E T E +P E
Sbjct: 434 PVSKPKESAEEQKPSKEPEVKPTTPSASKVEE-PSKKRDEDNHQKEETVTQPKREKTPVE 492
Query: 393 NGDAEESNDASENGDATEKKETGVKRKSVALDE 491
+ ++ + KKE ++K DE
Sbjct: 493 KSFPKPASSPVTFSEDV-KKEPSEEKKLEVSDE 524
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 375 EDSPAE-NGDAEESNDASENGDATEKKETGVKRKSVALDEE 494
ED+ A+ E+SN A+ NG+ T GV + S +D+E
Sbjct: 41 EDARADLQSSMEDSNKANGNGEETTDGAEGVLQTSEEVDDE 81
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 27.1 bits (57), Expect = 3.1
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -3
Query: 506 LFCCFFIKSHRFPLHTSLFLF 444
L CC++I S++ H+S+F++
Sbjct: 464 LLCCYYIYSYKLIPHSSIFVY 484
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/69 (31%), Positives = 28/69 (40%)
Frame = +3
Query: 303 KKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVA 482
K P +S + NGT + A DAEES + E EKK K+KS
Sbjct: 405 KLLPLPTAPVQQSKVQINGTSAYSTATDAVTKDAEESQEDVEMDIVIEKK----KKKSSK 460
Query: 483 LDEETAEKT 509
L E E +
Sbjct: 461 LKEADGESS 469
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 4.0
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +3
Query: 288 KESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVK 467
K +PV A VEA + NG +++ + E+ + +E ++A++ + KKE +
Sbjct: 403 KPAPVVAPAAPTVEA-----EVNGVEDSKKRKSVESSEKDE-DEAAKKEEKRRKKEAKKE 456
Query: 468 RKSVALDEETAEK 506
+K +E EK
Sbjct: 457 KKEKKEKKEKKEK 469
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 324 VEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 455
VE + NG + + ++ +DS ++ + ESND S + DA + +
Sbjct: 372 VEEIKKNGIQEDS-QSTDDSSKDDDNNSESNDMSPHNDAETRAD 414
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 375 EDSPAENGDAEESNDASENGDATEKKETGVKRKSVALDEETAEKT 509
E+ E+ E NDA+E G + +K+ K+KS + E+T
Sbjct: 22 ENDVVEDDGKVEENDAAEEGASNGEKKKKKKKKSSKKKKTPQEQT 66
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 711 RAQPFIV*GYQYGCNTFVGAGYVDVS*TLMGIDALQ 604
RA P ++ G N + + Y D MGIDAL+
Sbjct: 36 RAPPPVIDGSSVDANRIIRSDYADAVYCSMGIDALE 71
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 270 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASE---NGDA 440
+ ++ K SPV + A +N + + +SP + EE+N A + A
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENNQAVRAILDASA 586
Query: 441 TEKKETGVKR 470
T +K+ + R
Sbjct: 587 TMEKQYDLHR 596
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -2
Query: 120 FYLHRIPKFYL*F--FRLHLAVDYLYIDYLEKLLN 22
FY + I + + F + +H +V +L +DYL L+N
Sbjct: 1003 FYAYAIGFYSISFPMYAIHASVKFLKLDYLRSLMN 1037
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 5.4
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = +3
Query: 252 GVAPEEVTSTEPKES-PVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG-DAEESNDAS 425
G + PK S P +PA V A +S NG E+ ENG D SND+
Sbjct: 385 GTTTNPFSFAAPKSSFPTSSTPAS-VGAEKSEETSNGNKSEQEEK--ENGNDETRSNDSL 441
Query: 426 ENGDAT-EKKETGV 464
+G E+ E V
Sbjct: 442 VSGKGKGEENEDSV 455
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 458 SLFLFCGITVLRCIVAFF-GITIFSRRIFWGFIGTILFA 345
++F + C+ FF G TI+ +F G +GT L A
Sbjct: 356 AVFFIFSLFFFLCMRNFFPGFTIYFPALFLGVVGTFLIA 394
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 26.2 bits (55), Expect = 5.4
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +3
Query: 309 SPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVALD 488
+P K+ E AE+ +D + DAEE S+ G T KKE +++ AL
Sbjct: 3 NPKKRAEKAEA------AKSRKQDEEKKKKDAEEDEKWSK-GVKTNKKEQEAEKRKAAL- 54
Query: 489 EETAEK 506
E AE+
Sbjct: 55 ERKAER 60
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.8 bits (54), Expect = 7.1
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Frame = +3
Query: 243 RQEGVAPEEVTSTEPKESPVKKSPA---KKVEAAESN-----------GKEN---GTDEA 371
R+ P ++ S+ PK+ V++SPA + + A + N G++N T
Sbjct: 182 RRSTELPSKIPSSTPKDDNVQESPAFPDENITALQKNVANFTSIKDSGGRDNLYIQTISK 241
Query: 372 PEDSPAENGDAEES-NDASENGDATEKKETGVKRKSVALDEET 497
P S +N +E++ + +N EKK K + DE++
Sbjct: 242 PRRSYVQNNKSEQTIKPSKQNKQKEEKKTISQGNKPNSRDEDS 284
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 366 EAPEDSPAENGDAEESNDASENGDATEK 449
E PEDS E+G +E + D SE+G+ E+
Sbjct: 235 EPPEDS--EDGISEMNEDPSESGEMIEQ 260
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 303 KKSPAKKVEAAESNGKENGTDE--APEDSPAENGDAEESNDASENGDATEKKETGVKRKS 476
KK ++ + + G++ E AP+ + E E + + AT K + RK
Sbjct: 116 KKMTSETQPSTDEKGRKVSATENSAPKKTDKEKSSGETAGNILREQIATGKDDDEYARKF 175
Query: 477 VALDEETAEKT 509
++EE++E++
Sbjct: 176 EEVEEESSEES 186
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 9.4
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +3
Query: 258 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 437
A EE + SP + S K + E + ENG + +N D E DA NG
Sbjct: 144 ADEEGSEISVPSSPKRMSFNLKEDMEEGDFDENG------NFIRKNYDPESQYDAWLNGS 197
Query: 438 ATEKKETGVKRKS 476
+ KK R++
Sbjct: 198 VSNKKSIAAAREA 210
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 288 KESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 416
+E +S + EA E NG + S EN D+EE N
Sbjct: 3939 EEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEEN 3981
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = +1
Query: 676 ILIASYYEGLSSFV-----SDLSLGYIIINTLCINFT 771
IL+ E L SF+ +DL L I+IN+LC FT
Sbjct: 670 ILLGETSESLFSFIMWLKINDLELRGIVINSLCKLFT 706
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +3
Query: 261 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE---NGDAEESND-ASE 428
P E +TE + + +S + ++ S + D DSP + N + +D SE
Sbjct: 351 PSENDTTESENDTLSESSTTSISSSPSENSDTSDDLTKVDSPNKSLVNDNVSAKHDKESE 410
Query: 429 NG 434
NG
Sbjct: 411 NG 412
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 25.4 bits (53), Expect = 9.4
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = +3
Query: 249 EGVAPEEVTSTEPKESPVKKSPAKK-VEAAESNGKENGTDEAPEDSPAENGDAEESNDAS 425
+G P+ T++ P ++ P VEA EN T++ P EE AS
Sbjct: 341 KGKTPQNDTAS-PIDNETSADPVDTTVEAQSVEVPENETNQIPTTEEHFPATTEEVAPAS 399
Query: 426 ENGDATEKKETGVKRKSV 479
E AT E ++V
Sbjct: 400 EEKPATGPAEESTSTQNV 417
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = -2
Query: 438 HHRSQMHRCFLR--HHHFQQANLLGL--HRYHSL-CHY 340
HH SQ ++C LR HH N +G H++ L C Y
Sbjct: 111 HHCSQCNKCILRMDHHCMWFKNCVGFRNHKFFFLECFY 148
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.4
Identities = 20/87 (22%), Positives = 35/87 (40%)
Frame = +3
Query: 216 PCNNGRRSRRQEGVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 395
P GR++ RQE + + S S + S + +A + + + EA S
Sbjct: 67 PKFKGRKTSRQELLNSGSLNSQSSSPSEEEDSEEDENDAVSEDHENFSSSEASSISEENE 126
Query: 396 GDAEESNDASENGDATEKKETGVKRKS 476
D + S ++ D +K G K+ S
Sbjct: 127 DDDQSSAIPEKDMDRLKKIINGEKKLS 153
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 288 KESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESND 419
KE ++ AKK+ ES K+ A + + + A+E ND
Sbjct: 41 KEKAKARAEAKKLAKKESKAKQESKVAAYDTGNSSDNIADEEND 84
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 300 VKKSPAKKVEAAESNGKE--NGTDEAPEDSPAENGDAEESNDASENGDATEKKETG 461
++K+ AKK E G DE P + + G+A + N+ E + KK+ G
Sbjct: 103 LEKAYAKKYAPIFKRRSEVVRGADE-PTEEEIKKGEAADENEKKEPTSSESKKQEG 157
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 282 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 395
E +ESP+K P KK + E T + SP E+
Sbjct: 892 ETRESPMKNKPTKKQHKRAFSMFERPTSQKAPLSPVES 929
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,911
Number of Sequences: 5004
Number of extensions: 52399
Number of successful extensions: 288
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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