Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1872
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0213 + 16496215-16496617,16496939-16497057                       32   0.45 
12_01_0961 + 9566730-9566998,9567096-9567187,9567294-9567427,956...    29   5.5  
08_01_0050 + 350768-351214,352597-352717,352944-353118,353225-35...    28   9.6  

>02_03_0213 + 16496215-16496617,16496939-16497057
          Length = 173

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 700 ISYVHSRSSKQSLPTDTVETNGAILRSHL-LLECFRMDLKNRNRQ 569
           ++ VH    K+ +PTDT+E + A ++    L+E F +D   + RQ
Sbjct: 19  LTEVHRMRDKRKVPTDTLEEDMAFIKKDFQLMESFLVDAAEKRRQ 63


>12_01_0961 +
           9566730-9566998,9567096-9567187,9567294-9567427,
           9567542-9567591,9569026-9569100,9569179-9569734
          Length = 391

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 555 PPMNPCLFLFFRSILKHSNSKCDRSMAPLVSTVSVGRDCLLDRLCTYEIQ 704
           P   PC   F    LKH+ +KC +        +S  R C ++ +    IQ
Sbjct: 174 PSTTPCGHSFCMKCLKHAAAKCGKRCPKCRQLISNSRSCTVNTVLWNTIQ 223


>08_01_0050 +
           350768-351214,352597-352717,352944-353118,353225-353295,
           353575-354209
          Length = 482

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 477 SVQNKTAIGRNGKKMVPTL--ARSQKTHPPMNPCLFLFFRSILKHSNSKCDRSMAPLVST 650
           +V+ KT +GR G     T+   R +K   P+      F R    HS+ K DRS  P +S 
Sbjct: 352 AVRIKTDVGRGGYITNITIENVRMEKVKVPIR-----FSRGADDHSDDKYDRSALPKISD 406

Query: 651 VSV 659
           V +
Sbjct: 407 VRI 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,545,112
Number of Sequences: 37544
Number of extensions: 385694
Number of successful extensions: 706
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)