Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1872
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormo...    29   5.0  
Z83116-8|CAB05567.1|  397|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical ...    28   8.7  

>Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical
           protein T07C5.1c protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 320 AHEKSFYYFFITKMDTPNVKWLPEPIDINHANAQTILRH 436
           A ++S   FF T  +   V W+P+   + HAN +  + H
Sbjct: 341 ADDESSAQFFSTVQNVDLVDWVPQKAVLRHANLKLFVSH 379


>AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 270 protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 570 CLFLFFRSILKHSNSKCDRSMA-PLVSTV-SVGRDC 671
           C+  F RS+LK+++ KC R  A P+VS   S  R C
Sbjct: 90  CILFFRRSVLKNASYKCGRKGACPVVSEFRSTCRHC 125


>Z83116-8|CAB05567.1|  397|Caenorhabditis elegans Hypothetical
           protein M01B2.10 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 586 SDPF*NIPIVSVIAVWLHWSQQCPWEEIAY*TDYAHMKFNK 708
           S+PF  +   ++   WL+++ +  W E+ Y T+  H+ F +
Sbjct: 325 SNPFIKLVPTAIPGQWLYFNNRTVWVELFY-TENVHLDFGR 364


>AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.16 protein.
          Length = 929

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
 Frame = +3

Query: 573 LFLFFRSILKHSNSKCDRSMAPLVSTVSVGRDCL--LDRLCTYEIQQKNVLSLYTIIIMG 746
           LF    S ++H  + C +SM  L+   S+  DC+   D+  + +  +  + SL  +   G
Sbjct: 76  LFFKLHSKIRHDETLCTKSMNCLIQLASLTGDCMPVADQEASTKYVRMYISSLLELFAQG 135

Query: 747 LL------VCLLIN-LYIY 782
                    CL+IN L++Y
Sbjct: 136 PSNWETNHFCLIINRLFLY 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,937,581
Number of Sequences: 27780
Number of extensions: 381477
Number of successful extensions: 854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)