Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1871
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    29   1.0  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    28   1.3  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    28   1.3  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    27   4.0  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    27   4.0  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    26   5.4  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   5.4  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    26   5.4  
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    25   9.4  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   9.4  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    25   9.4  

>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 60  ELHEQDNIISDETLVIEPPPGLEDKDDDHDIEITVDQSTSPTKNVIEKQS 209
           E+ + D   + ET V E P G E+ + DH+ + +VD      K   E  S
Sbjct: 146 EIEKDDESATTETPVKEEPTG-EETEADHEEKASVDHGNFSDKTTSEASS 194


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 123 LEDKDDDHDIEITVDQSTSPTKNVIEKQSVLRLTASYTGKSEKSPRLAIAINPTDR 290
           +ED DDD D  ++VD++ SP           R  A Y  KS ++  L++ ++  ++
Sbjct: 408 IEDDDDDDDAWVSVDEAESP-------HFTKRSPAPYLSKSFRNSALSLLLSQDEK 456


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +3

Query: 129 DKDDDHDIEITVDQSTSPTKNVIEKQSVLRLTASYTGKSEKS 254
           +KD+ +  E+T     + T + ++ + ++ LTA Y  +  +S
Sbjct: 253 EKDEKYTFELTFPNKPAETISTLQAEEIVALTAKYLSRQMRS 294


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 176 CRLVYSYFNVMVIIFVFQA-RRWLYNKSLIRYYV 78
           CRLVY    VMV + +F     WL   S+  +Y+
Sbjct: 46  CRLVYFIMAVMVFLVIFDGFPFWLSAFSIFSHYI 79


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = +3

Query: 21  ASTSHTLVATTRVELHEQDNIISDETLVIEPPPGLEDKDDDHDIEITVDQSTSPTK-NVI 197
           +S  H +  T    LH +  +    T++       E KDDD D  +    +T+PT  ++I
Sbjct: 88  SSQHHGVYHTRPASLHSR-TMAPQHTILTPRLSATEGKDDDEDELVISTSNTAPTYISMI 146

Query: 198 EKQSVLRLTASYTGKSEKSPRLAIAINPTDRA 293
           E     R +++++G +     ++I      RA
Sbjct: 147 ESS---RASSTHSGTAPSIMGMSIHSRADSRA 175


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 510 ELDIDMPSRLYSQEEKHSERYQSQEFSNILRE 605
           +LDID   + Y  +++  E Y S+   NIL++
Sbjct: 544 KLDIDTGLKTYDNQDEEKEEYSSKGPLNILKK 575


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 167 VYSYFNVMVIIFVFQARRWLYNKSLIRYYVVLFVQLY 57
           VY YF  +++    Q  RW +NK      V  ++  Y
Sbjct: 9   VYFYFFPLLVFITLQYPRWTFNKWKALLPVSAYISFY 45


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 24  STSHTLVATTRVELHEQDNIISDETLVIEPPPGLEDKDDDHDI 152
           S +   V  + V+ H+  N    E + +EP   + D DDD++I
Sbjct: 42  SITENYVQDSSVDEHDDGNWQPMEVISLEPTHLINDIDDDNEI 84


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/67 (19%), Positives = 35/67 (52%)
 Frame = +3

Query: 549 EEKHSERYQSQEFSNILREETVSPFIRSDFKPLAKHASYDDRTLSKNPIKDTNLLLSIDV 728
           +E  + ++ +Q+   +++ +T   F+   +  LAKHA +  R  S+  +   +   + D 
Sbjct: 34  DELITSKHANQKGEQVIQVDTGIGFLDHMYHALAKHAGWSLRLYSRGDLIIDDHHTAEDT 93

Query: 729 SLRVGLS 749
           ++ +G++
Sbjct: 94  AIALGIA 100


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 510 ELDIDMPSRLYSQEEKHSERYQSQEFSNILREETVSPFIRSDFKPLA 650
           E D D    +YS ++ +++R+ S+  +  L+EE +    R   + LA
Sbjct: 208 EADDDSNDDMYSDDDSNADRWASRIDTAALKEEVLKYMNRCSTQDLA 254


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 27  TSHTLVATTRVELHEQDNIISDETLVI 107
           T+H L +  ++E+ + DN+   ET+V+
Sbjct: 95  TTHQLASLPKLEVTDHDNVSEAETVVL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,328
Number of Sequences: 5004
Number of extensions: 59676
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)