Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1871
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1248 + 28685911-28687719 33 0.26
10_06_0083 + 10471648-10471806,10473261-10473343,10473384-104738... 31 1.0
04_01_0344 + 4517730-4517918,4518212-4518359,4518454-4518569,451... 29 4.2
02_05_1272 + 35373843-35374031,35374343-35374490,35374586-353747... 29 4.2
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 29 5.6
01_06_0338 + 28538951-28538966,28539073-28539183,28539311-285394... 29 5.6
12_01_0312 + 2349696-2350424 28 7.4
05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330 28 7.4
03_06_0133 - 31906305-31906582,31906820-31907105,31907442-319075... 28 7.4
>06_03_1248 + 28685911-28687719
Length = 602
Score = 33.1 bits (72), Expect = 0.26
Identities = 17/67 (25%), Positives = 37/67 (55%)
Frame = +3
Query: 51 TRVELHEQDNIISDETLVIEPPPGLEDKDDDHDIEITVDQSTSPTKNVIEKQSVLRLTAS 230
T +E ++D++ +++ EP +E+++D D+E S+ P + E+ T++
Sbjct: 468 TPLEEEDRDDVETEQANSSEPATTVEEEEDRDDVETEQASSSDPATPLNEEAINEEGTST 527
Query: 231 YTGKSEK 251
TGK++K
Sbjct: 528 ETGKTKK 534
>10_06_0083 +
10471648-10471806,10473261-10473343,10473384-10473810,
10475806-10475932,10476329-10476471,10476687-10476749,
10476833-10476898,10477047-10477085
Length = 368
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/41 (48%), Positives = 23/41 (56%)
Frame = +3
Query: 33 HTLVATTRVELHEQDNIISDETLVIEPPPGLEDKDDDHDIE 155
H LV T +E+ Q N +S VIEPP G ED DD D E
Sbjct: 221 HWLVLTNGIEVKLQRNALS----VIEPPTGNED-DDKFDCE 256
>04_01_0344 +
4517730-4517918,4518212-4518359,4518454-4518569,
4518917-4518979,4519084-4519152,4519317-4519352
Length = 206
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 33 HTLVATTRVELHEQDNIISDETLVIEPPPGLEDKDD 140
H LV VE+ Q N +S V+EPP G ED DD
Sbjct: 61 HWLVLKNGVEVKLQRNALS----VLEPPTGNEDDDD 92
>02_05_1272 +
35373843-35374031,35374343-35374490,35374586-35374704,
35374992-35375121,35375122-35375201
Length = 221
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 33 HTLVATTRVELHEQDNIISDETLVIEPPPGLEDKDD 140
H LV VE+ Q N +S V+EPP G ED DD
Sbjct: 61 HWLVLKNGVEVKLQRNALS----VLEPPTGNEDDDD 92
>02_01_0041 +
279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +3
Query: 540 YSQEEKHSERYQSQEFSNILREETVSPFIRSDFKPLAKHASYDDRTLSKN 689
+S + ++Q+ FSN ++ E+ + + F+ L +HA + S N
Sbjct: 346 FSNNYSYQSQWQTNSFSNSMQPESATASLPDSFQSLGQHAISESFNSSTN 395
>01_06_0338 +
28538951-28538966,28539073-28539183,28539311-28539479,
28540841-28541063,28541148-28541204,28541718-28541861,
28541939-28542019,28543026-28543113,28543579-28543943,
28544011-28544086,28544174-28544367,28544846-28545009,
28545080-28545152,28545237-28545350,28545839-28545919,
28546043-28546102,28546180-28546289,28546325-28546501,
28546599-28546683
Length = 795
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 600 REETVSPFIRSDFKPLAKHASYDDRTLSK 686
R +TV+P + + KP A+ Y +++LSK
Sbjct: 264 RNDTVNPDLEMELKPQARPRPYQEKSLSK 292
>12_01_0312 + 2349696-2350424
Length = 242
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 66 HEQDNIISDETLVIEPPPGLEDKDDD 143
H Q+N ++ ++ PPP ++D+DDD
Sbjct: 63 HGQNN--DEDAMMAAPPPSIDDEDDD 86
>05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330
Length = 564
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 400 GPPKSLSCEEKSQKLSKPTTRCQSEDSDFKPYFTPQ 507
GPP+ L + ++ S PT+ Q + D +P +PQ
Sbjct: 86 GPPRRLQAVSRDEQDSLPTSSPQPDVRDSQPALSPQ 121
>03_06_0133 -
31906305-31906582,31906820-31907105,31907442-31907566,
31907645-31907759,31907852-31908485,31911425-31911555,
31912308-31912397,31912440-31912486,31913707-31913761,
31914576-31914908,31915278-31915337,31915427-31915618,
31916149-31916220,31916307-31916435
Length = 848
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +3
Query: 543 SQEEKH---SERYQSQEFSNILREETVSPFIRSDFKPLAKHASY 665
SQE H S+++ + F+N+L + + P I D + KH S+
Sbjct: 793 SQEGNHVKPSQQFGIEAFTNLLNNQCLQPTINIDGRRSKKHCSF 836
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,226,847
Number of Sequences: 37544
Number of extensions: 336483
Number of successful extensions: 946
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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