Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1871
(789 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79600-5|CAB01878.2| 412|Caenorhabditis elegans Hypothetical pr... 34 0.13
AF520567-1|AAM75345.1| 412|Caenorhabditis elegans intraflagella... 34 0.13
Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical pr... 31 0.94
L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical ... 29 5.0
Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z48795-5|CAA88729.1| 337|Caenorhabditis elegans Hypothetical pr... 28 6.6
AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine... 28 6.6
AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine... 28 6.6
AL132949-10|CAB61082.1| 721|Caenorhabditis elegans Hypothetical... 28 6.6
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 28 8.8
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 28 8.8
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 8.8
U21317-4|AAA62523.1| 719|Caenorhabditis elegans Hypothetical pr... 28 8.8
>Z79600-5|CAB01878.2| 412|Caenorhabditis elegans Hypothetical
protein F59C6.7 protein.
Length = 412
Score = 33.9 bits (74), Expect = 0.13
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +3
Query: 69 EQDNIISDETLVIEPPPGLEDKDDDHDIEITVDQSTSPTKNVIEKQSVLRL-TASYTGKS 245
EQD ++ +V EP L+D DDD+ IEI + T++ QSVL+ T + T K
Sbjct: 174 EQDEDDDNDDIVEEPMNFLDDDDDDNVIEIDLKAQGLATESKNPLQSVLQSNTDAITWKQ 233
Query: 246 E---KSPRLAIAI 275
E +P+L I +
Sbjct: 234 EVERVAPQLKITL 246
>AF520567-1|AAM75345.1| 412|Caenorhabditis elegans intraflagellar
transport proteinCHE-13 protein.
Length = 412
Score = 33.9 bits (74), Expect = 0.13
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +3
Query: 69 EQDNIISDETLVIEPPPGLEDKDDDHDIEITVDQSTSPTKNVIEKQSVLRL-TASYTGKS 245
EQD ++ +V EP L+D DDD+ IEI + T++ QSVL+ T + T K
Sbjct: 174 EQDEDDDNDDIVEEPMNFLDDDDDDNVIEIDLKAQGLATESKNPLQSVLQSNTDAITWKQ 233
Query: 246 E---KSPRLAIAI 275
E +P+L I +
Sbjct: 234 EVERVAPQLKITL 246
>Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical
protein R06C7.9 protein.
Length = 729
Score = 31.1 bits (67), Expect = 0.94
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 78 NIISDETLVIEPPPGLEDKDDDHDIEITVDQSTSPTKNVI 197
+++ D L P +D DDD D + T+ S+S T N++
Sbjct: 424 SVVPDVNLFGIEPEREDDNDDDEDADATISSSSSSTGNLV 463
>L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical
protein F44E2.3 protein.
Length = 244
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 3 SISDWSASTSHTLVATTRVELHEQDNIISDETLVIEPPPGLEDKDDDHDIEITVDQST-- 176
S S+ S + H L + R E ++ +E+ + PPP D D I D ST
Sbjct: 47 SSSEGSQAEPHQLGSIFREERRRRER---NESPKLPPPPPPPPSDPPVDTSIPFDVSTLN 103
Query: 177 SPTKNVIEKQSVLRLTA 227
PTK +E++ V +++A
Sbjct: 104 EPTKKWLEEKIVEQVSA 120
>AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical
protein T26C12.3 protein.
Length = 393
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 552 EKHSERYQ-SQEFSNILREETVSPFIRSDFKPLAKHASYDDRTLSKNPI 695
+ HS+ Y + S+ ++ V PF D +PL +S + LS P+
Sbjct: 59 QSHSDYYSVASSCSSSCSDDDVIPFFEQDLRPLVDASSTESDDLSSLPV 107
>Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical
protein R06A4.10b protein.
Length = 511
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 54 RVELHEQDNIISDETLVIEPPPGLEDKDDDHDIEITVDQSTSPT 185
R +++ ISD +V P L +DDD D+ + ++ T+PT
Sbjct: 383 RCTINKDVTCISDSGIVAMGVPTLASEDDDQDVSL-LELETTPT 425
>Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical
protein R06A4.10a protein.
Length = 514
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 54 RVELHEQDNIISDETLVIEPPPGLEDKDDDHDIEITVDQSTSPT 185
R +++ ISD +V P L +DDD D+ + ++ T+PT
Sbjct: 386 RCTINKDVTCISDSGIVAMGVPTLASEDDDQDVSL-LELETTPT 428
>Z48795-5|CAA88729.1| 337|Caenorhabditis elegans Hypothetical
protein R05H5.6 protein.
Length = 337
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = -2
Query: 218 SQNGLFFYDIFCRRCRLVYSYFNVMVIIFVFQARRWLYNKSLIRYYVVLFVQLYTRSCYE 39
S + L+ Y F ++S F ++ +I +F+ R +N ++ Y+V F Q+
Sbjct: 11 SYDPLYRYSQFYTLLTSIFSVFPLLYLI-IFKLRVCTFNDNIKFLYIVYFTQILISVLNN 69
Query: 38 CV 33
CV
Sbjct: 70 CV 71
>AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine
receptor alternativevariant b protein.
Length = 459
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 54 RVELHEQDNIISDETLVIEPPPGLEDKDDDHDIEITVDQSTSPT 185
R +++ ISD +V P L +DDD D+ + ++ T+PT
Sbjct: 331 RCTINKDVTCISDSGIVAMGVPTLASEDDDQDVSL-LELETTPT 373
>AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine
receptor 20 (63.9kD) alternative variant a protein.
Length = 553
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 54 RVELHEQDNIISDETLVIEPPPGLEDKDDDHDIEITVDQSTSPT 185
R +++ ISD +V P L +DDD D+ + ++ T+PT
Sbjct: 425 RCTINKDVTCISDSGIVAMGVPTLASEDDDQDVSL-LELETTPT 467
>AL132949-10|CAB61082.1| 721|Caenorhabditis elegans Hypothetical
protein Y53F4B.12 protein.
Length = 721
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/52 (21%), Positives = 27/52 (51%)
Frame = +3
Query: 24 STSHTLVATTRVELHEQDNIISDETLVIEPPPGLEDKDDDHDIEITVDQSTS 179
++++ + R +H D + D+++ + P LED DD ++ + +T+
Sbjct: 410 TSNYKSIGKKRTRVHIDDGVSIDDSVSLIPSRHLEDHDDQSEVSHSTFDTTA 461
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +3
Query: 33 HTLVATTRVELHEQDNIIS--DETLVIEPPPGLEDKDDDHDIEITVDQSTSPTKNVIEKQ 206
H + + + +D II+ +T + +PPPG + K+ HD TV S T++V+ +
Sbjct: 337 HPKMGLIKKRIMPEDVIINCGKDTEIPKPPPGHKWKEVRHD--NTVTWLCSWTESVLGQN 394
Query: 207 SVLRLTASYTGKSEK 251
+ L S K EK
Sbjct: 395 KYIMLNPSSKIKGEK 409
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +3
Query: 33 HTLVATTRVELHEQDNIIS--DETLVIEPPPGLEDKDDDHDIEITVDQSTSPTKNVIEKQ 206
H + + + +D II+ +T + +PPPG + K+ HD TV S T++V+ +
Sbjct: 409 HPKMGLIKKRIMPEDVIINCGKDTEIPKPPPGHKWKEVRHD--NTVTWLCSWTESVLGQN 466
Query: 207 SVLRLTASYTGKSEK 251
+ L S K EK
Sbjct: 467 KYIMLNPSSKIKGEK 481
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +3
Query: 33 HTLVATTRVELHEQDNIIS--DETLVIEPPPGLEDKDDDHDIEITVDQSTSPTKNVIEKQ 206
H + + + +D II+ +T + +PPPG + K+ HD TV S T++V+ +
Sbjct: 409 HPKMGLIKKRIMPEDVIINCGKDTEIPKPPPGHKWKEVRHD--NTVTWLCSWTESVLGQN 466
Query: 207 SVLRLTASYTGKSEK 251
+ L S K EK
Sbjct: 467 KYIMLNPSSKIKGEK 481
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/38 (26%), Positives = 16/38 (42%)
Frame = +1
Query: 394 PEGPPKSLSCEEKSQKLSKPTTRCQSEDSDFKPYFTPQ 507
P PP + C + +P+ C + F P + PQ
Sbjct: 72 PPPPPPPMPCPPPPPPMPRPSCPCMMQRPSFYPSYVPQ 109
>U21317-4|AAA62523.1| 719|Caenorhabditis elegans Hypothetical
protein B0495.2 protein.
Length = 719
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 69 EQDNIISDETLVIEPPPGLEDKDDDHDIEITVDQSTSPTK 188
+ D+++ E + + P LE+K++ +E T+D P K
Sbjct: 212 KDDDVLVIEDVEMSPIEILEEKEEKEIVEFTIDSPAGPKK 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,469,979
Number of Sequences: 27780
Number of extensions: 329116
Number of successful extensions: 1295
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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