Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1870
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0584 - 5230266-5230447,5230453-5230554,5230902-5230987,523...    29   3.5  
11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502     29   4.6  

>05_01_0584 -
           5230266-5230447,5230453-5230554,5230902-5230987,
           5232261-5232520
          Length = 209

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 475 ILSFSERVNFIILLAFARDSIHVE*LLWHN 386
           I  F E+   I+L++F RD++HV+   W N
Sbjct: 128 IFVFVEKDELILLMSFVRDAVHVQGHHWLN 157


>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
          Length = 1385

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 271  LYWSYRMLYSL*PSSINGLSNTEIIFLIGPVVPD 170
            + WS+  + SL  S IN LS  + + LIG +VPD
Sbjct: 1299 IIWSFTKMNSL--SGINNLSKLKELELIGDLVPD 1330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,361,512
Number of Sequences: 37544
Number of extensions: 272026
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)