Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1870
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   4.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   6.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.3  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 625 IPLIAMVLFYLRMNST 578
           IPLI ++LFY R+ S+
Sbjct: 231 IPLIFIILFYSRLLSS 246


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = -3

Query: 411 TWNSYFGITLNLTPHFIYVKSENIFELLNVKELFKP 304
           TW   F   ++L P     +    F+ +  +++F+P
Sbjct: 239 TWTRVFNTLVDLVPKHACAEYRRNFKKMQEEKIFEP 274


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 625 IPLIAMVLFYLRMNST 578
           IPLI ++LFY R+ S+
Sbjct: 231 IPLIFIILFYSRLLSS 246


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 220 HLLKKAIGYITSGKTNTSG 276
           H+    IG++ SGK+ T+G
Sbjct: 7   HINIVVIGHVDSGKSTTTG 25


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 381 NLTPHFIYVKSENIFELLNVKELFKP 304
           N+T  F  + +  I EL  +  ++KP
Sbjct: 572 NMTDSFTRIANNTIQELYTLNNMYKP 597


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 220 HLLKKAIGYITSGKTNTSG 276
           H+    IG++ SGK+ T+G
Sbjct: 7   HINIVVIGHVDSGKSTTTG 25


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 472 LSFSERVNFIILLAFARDS 416
           L  ++R NF+ +LA  RD+
Sbjct: 647 LLVADRPNFVTILALVRDA 665


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,249
Number of Sequences: 438
Number of extensions: 3617
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)