Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1869
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919...    29   5.2  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    28   6.8  

>03_02_0528 +
           9189215-9189330,9190111-9190204,9190654-9190743,
           9191601-9191717,9192187-9192259,9192335-9192453,
           9192569-9192690,9192777-9192953,9193189-9193333,
           9193458-9193636,9193742-9193991
          Length = 493

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 420 HCRPAQVDFDVT--VRTTELVEGLPTYPAGRSEFSL 319
           HC  A   +D+T  ++T  L   L  YP GR+  SL
Sbjct: 214 HCENAHFTYDITSKLKTKFLGNSLEVYPLGRTRVSL 249


>04_04_1571 +
           34504087-34504421,34505002-34505731,34506091-34512077,
           34512493-34513964,34514114-34514377,34514761-34514978,
           34515759-34516030,34516190-34516559,34516578-34516797,
           34516819-34518931,34518941-34519193,34519269-34519401,
           34520597-34521114,34521207-34522115,34522195-34522368,
           34522833-34522882,34523963-34524035,34524413-34524477,
           34524736-34525522,34525622-34525878,34525989-34526109,
           34526315-34526956
          Length = 5320

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 232 TIDVCREVAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNE---FCSSDGDIEIY 402
           +I++C+++ + +    G       + ++  R++  P GV  Q LN+   FC S  D +I 
Sbjct: 816 SINLCKKLPIFRVFDGGSPSSYGFSDLSTSRKYLPPLGVAEQLLNDDFVFCISPSDEDII 875

Query: 403 L 405
           +
Sbjct: 876 M 876


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,450,645
Number of Sequences: 37544
Number of extensions: 344583
Number of successful extensions: 815
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)