Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1869
(743 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L27943-1|AAA57254.1| 146|Homo sapiens cytidine deaminase protein. 67 5e-11
AL391357-8|CAH73474.1| 146|Homo sapiens cytidine deaminase prot... 67 5e-11
AJ000474-1|CAA04113.1| 146|Homo sapiens cytidine deaminase prot... 67 5e-11
AF061658-1|AAD15828.1| 146|Homo sapiens cytidine deaminase prot... 67 5e-11
S52873-1|AAB24946.1| 145|Homo sapiens cytidine deaminase protein. 66 2e-10
BC054036-1|AAH54036.1| 146|Homo sapiens cytidine deaminase prot... 66 2e-10
AF095644-1|AAC69599.1| 51|Homo sapiens cytidine deaminase prot... 46 2e-04
AY634312-1|AAT47715.2| 82|Homo sapiens small cytidine deaminas... 44 6e-04
>L27943-1|AAA57254.1| 146|Homo sapiens cytidine deaminase protein.
Length = 146
Score = 67.3 bits (157), Expect = 5e-11
Identities = 31/62 (50%), Positives = 45/62 (72%)
Frame = +2
Query: 83 ETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAERWLL 262
E VQ LL+ + + +K AYCPYS+F VGAA+LT+E R++ GCNIEN+ +CAER +
Sbjct: 13 ECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQE-GRIFKGCNIENACYPLGICAERTAI 71
Query: 263 RR 268
++
Sbjct: 72 QK 73
Score = 54.8 bits (126), Expect = 3e-07
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +1
Query: 235 IDVCRE-VAVAKAVCDGYTKFKCVAIVAH-QREFTAPCGVCRQTLNEFCSSDGDIEIYLS 408
+ +C E A+ KAV +GY F+ +AI + Q +F +PCG CRQ + EF + + +Y++
Sbjct: 62 LGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGT---NWPVYMT 118
Query: 409 RPTMDTVLCTKLSHLLPLSF 468
+P T + + LLP SF
Sbjct: 119 KPD-GTYIVMTVQELLPSSF 137
>AL391357-8|CAH73474.1| 146|Homo sapiens cytidine deaminase
protein.
Length = 146
Score = 67.3 bits (157), Expect = 5e-11
Identities = 31/62 (50%), Positives = 45/62 (72%)
Frame = +2
Query: 83 ETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAERWLL 262
E VQ LL+ + + +K AYCPYS+F VGAA+LT+E R++ GCNIEN+ +CAER +
Sbjct: 13 ECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQE-GRIFKGCNIENACYPLGICAERTAI 71
Query: 263 RR 268
++
Sbjct: 72 QK 73
Score = 54.8 bits (126), Expect = 3e-07
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +1
Query: 235 IDVCRE-VAVAKAVCDGYTKFKCVAIVAH-QREFTAPCGVCRQTLNEFCSSDGDIEIYLS 408
+ +C E A+ KAV +GY F+ +AI + Q +F +PCG CRQ + EF + + +Y++
Sbjct: 62 LGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGT---NWPVYMT 118
Query: 409 RPTMDTVLCTKLSHLLPLSF 468
+P T + + LLP SF
Sbjct: 119 KPD-GTYIVMTVQELLPSSF 137
>AJ000474-1|CAA04113.1| 146|Homo sapiens cytidine deaminase
protein.
Length = 146
Score = 67.3 bits (157), Expect = 5e-11
Identities = 31/62 (50%), Positives = 45/62 (72%)
Frame = +2
Query: 83 ETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAERWLL 262
E VQ LL+ + + +K AYCPYS+F VGAA+LT+E R++ GCNIEN+ +CAER +
Sbjct: 13 ECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQE-GRIFKGCNIENACYPLGICAERTAI 71
Query: 263 RR 268
++
Sbjct: 72 QK 73
Score = 54.8 bits (126), Expect = 3e-07
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +1
Query: 235 IDVCRE-VAVAKAVCDGYTKFKCVAIVAH-QREFTAPCGVCRQTLNEFCSSDGDIEIYLS 408
+ +C E A+ KAV +GY F+ +AI + Q +F +PCG CRQ + EF + + +Y++
Sbjct: 62 LGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGT---NWPVYMT 118
Query: 409 RPTMDTVLCTKLSHLLPLSF 468
+P T + + LLP SF
Sbjct: 119 KPD-GTYIVMTVQELLPSSF 137
>AF061658-1|AAD15828.1| 146|Homo sapiens cytidine deaminase
protein.
Length = 146
Score = 67.3 bits (157), Expect = 5e-11
Identities = 31/62 (50%), Positives = 45/62 (72%)
Frame = +2
Query: 83 ETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAERWLL 262
E VQ LL+ + + +K AYCPYS+F VGAA+LT+E R++ GCNIEN+ +CAER +
Sbjct: 13 ECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQE-GRIFKGCNIENACYPLGICAERTAI 71
Query: 263 RR 268
++
Sbjct: 72 QK 73
Score = 54.8 bits (126), Expect = 3e-07
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +1
Query: 235 IDVCRE-VAVAKAVCDGYTKFKCVAIVAH-QREFTAPCGVCRQTLNEFCSSDGDIEIYLS 408
+ +C E A+ KAV +GY F+ +AI + Q +F +PCG CRQ + EF + + +Y++
Sbjct: 62 LGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGT---NWPVYMT 118
Query: 409 RPTMDTVLCTKLSHLLPLSF 468
+P T + + LLP SF
Sbjct: 119 KPD-GTYIVMTVQELLPSSF 137
>S52873-1|AAB24946.1| 145|Homo sapiens cytidine deaminase protein.
Length = 145
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/62 (48%), Positives = 45/62 (72%)
Frame = +2
Query: 83 ETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAERWLL 262
E VQ LL+ + + ++ AYCPYS+F VGAA+LT+E R++ GCNIEN+ +CAER +
Sbjct: 12 ECVQQLLVCSQEAKQSAYCPYSHFPVGAALLTQE-GRIFKGCNIENACYPLGICAERTAI 70
Query: 263 RR 268
++
Sbjct: 71 QK 72
Score = 54.8 bits (126), Expect = 3e-07
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +1
Query: 235 IDVCRE-VAVAKAVCDGYTKFKCVAIVAH-QREFTAPCGVCRQTLNEFCSSDGDIEIYLS 408
+ +C E A+ KAV +GY F+ +AI + Q +F +PCG CRQ + EF + + +Y++
Sbjct: 61 LGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGT---NWPVYMT 117
Query: 409 RPTMDTVLCTKLSHLLPLSF 468
+P T + + LLP SF
Sbjct: 118 KPD-GTYIVMTVQELLPSSF 136
>BC054036-1|AAH54036.1| 146|Homo sapiens cytidine deaminase
protein.
Length = 146
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/62 (48%), Positives = 45/62 (72%)
Frame = +2
Query: 83 ETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAERWLL 262
E VQ LL+ + + ++ AYCPYS+F VGAA+LT+E R++ GCNIEN+ +CAER +
Sbjct: 13 ECVQQLLVCSQEAKQSAYCPYSHFPVGAALLTQE-GRIFKGCNIENACYPLGICAERTAI 71
Query: 263 RR 268
++
Sbjct: 72 QK 73
Score = 54.8 bits (126), Expect = 3e-07
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +1
Query: 235 IDVCRE-VAVAKAVCDGYTKFKCVAIVAH-QREFTAPCGVCRQTLNEFCSSDGDIEIYLS 408
+ +C E A+ KAV +GY F+ +AI + Q +F +PCG CRQ + EF + + +Y++
Sbjct: 62 LGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGT---NWPVYMT 118
Query: 409 RPTMDTVLCTKLSHLLPLSF 468
+P T + + LLP SF
Sbjct: 119 KPD-GTYIVMTVQELLPSSF 137
>AF095644-1|AAC69599.1| 51|Homo sapiens cytidine deaminase
protein.
Length = 51
Score = 45.6 bits (103), Expect = 2e-04
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +2
Query: 83 ETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEE 184
E VQ LL+ + + +K AYCPYS+F VGAA+LT+E
Sbjct: 13 ECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQE 46
>AY634312-1|AAT47715.2| 82|Homo sapiens small cytidine deaminase
protein.
Length = 82
Score = 44.0 bits (99), Expect = 6e-04
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +2
Query: 83 ETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEE 184
E VQ LL+ + + ++ AYCPYS+F VGAA+LT+E
Sbjct: 13 ECVQQLLVCSQEAKQSAYCPYSHFPVGAALLTQE 46
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,729,924
Number of Sequences: 237096
Number of extensions: 1949216
Number of successful extensions: 7588
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7574
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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