Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1869
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61949-3|AAB03151.1|  166|Caenorhabditis elegans Cytidine deamin...    60   2e-09
U64861-1|AAB04993.1|  158|Caenorhabditis elegans Cytidine deamin...    52   3e-07
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical ...    29   2.6  
AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associa...    28   6.1  
AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap (death-as...    28   6.1  
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z75540-6|CAN86598.1|  584|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z75540-3|CAD01084.1|  581|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z75540-2|CAA99848.1|  582|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    28   8.0  

>U61949-3|AAB03151.1|  166|Caenorhabditis elegans Cytidine deaminase
           protein 2 protein.
          Length = 166

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = +1

Query: 241 VCRE-VAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRPT 417
           +C E  A+  AV  GYTKF+ +A+V    E  +PCG+CRQ L EF    GD ++ +   +
Sbjct: 61  ICAERSAIVSAVSQGYTKFRAIAVVTELSEPASPCGLCRQFLVEF----GDYKVVVGTAS 116

Query: 418 MDTVLCTKLSHLLPLSFVSFKKDS 489
            + +L T    LLP +F     D+
Sbjct: 117 NNKILITSTRALLPFAFTPESLDT 140



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
 Frame = +2

Query: 71  NSLDETVQN--LLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMC 244
           NSL + + +  L+  A    KRA+CPYS F VGAA+LT E   +  GCN+EN++   ++C
Sbjct: 4   NSLPQDISDVELVHLARAAMKRAHCPYSKFPVGAALLT-ESGEIVQGCNVENASYGGTIC 62

Query: 245 AER 253
           AER
Sbjct: 63  AER 65


>U64861-1|AAB04993.1|  158|Caenorhabditis elegans Cytidine deaminase
           protein 1 protein.
          Length = 158

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +1

Query: 241 VCRE-VAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRPT 417
           +C E  A+  A+  G+ KFK + +        +PCGVCRQ L EF    GD ++ L   T
Sbjct: 61  ICAERSAIVTALTKGHRKFKYIVVATELEAPCSPCGVCRQVLIEF----GDYKVILGSST 116

Query: 418 MDTVLCTKLSHLLPLSF 468
            D ++ T    LLP +F
Sbjct: 117 SDQIIETTTYELLPYAF 133



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 25/60 (41%), Positives = 38/60 (63%)
 Frame = +2

Query: 74  SLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAER 253
           +L E  Q L+ +A+   + AYC YSNF VGAA++  +D  +  G N EN++   ++CAER
Sbjct: 7   NLTEFEQQLVDKAIGAMENAYCKYSNFKVGAALVC-DDGEIIIGANHENASYGATICAER 65


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical
           protein F46C3.3 protein.
          Length = 2557

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 316 HQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRPTMDTVLCTKLSHLLPLSFVSF 477
           HQ   T   G  +QTL  +   + D + +L RPT D+     L+H L +   +F
Sbjct: 730 HQALGTENSGQLQQTLVGYIDINEDAKKFLERPTSDSDATETLTHYLTVPMKNF 783


>AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical
           protein F34D6.4 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 619 LLKPLNFFHLLFLLIEAV-KLHLRNNADTVTFIVFFFQSVF 500
           LL+P     L F  I  V K++++N  D +TF VFF++  F
Sbjct: 37  LLRPSQISFLFFFSIFYVFKMYVQNVKDHITFAVFFWKFFF 77


>AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associated
           protein kinase protein.
          Length = 1425

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 130 GLLSLFQFFCWCRYTYRRRFENVRRMQH*ELHFDTIDVCREVAVAKA 270
           GLL   Q  C C  T      N +   H   H+  +D+ R + +A+A
Sbjct: 602 GLLQAVQTLCHCAVTVDSVNANKKTALHLAAHYGHVDIIRVLLLARA 648


>AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap
           (death-associated protein)kinase homolog protein 1
           protein.
          Length = 1425

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 130 GLLSLFQFFCWCRYTYRRRFENVRRMQH*ELHFDTIDVCREVAVAKA 270
           GLL   Q  C C  T      N +   H   H+  +D+ R + +A+A
Sbjct: 602 GLLQAVQTLCHCAVTVDSVNANKKTALHLAAHYGHVDIIRVLLLARA 648


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +2

Query: 71  NSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENS 223
           N+LD  +Q ++  A++IRK  +  Y        ++ EED  ++   N+E++
Sbjct: 362 NALDRRIQYMIETAMQIRKDKFAAYPAVIEDLDLIEEEDQIIHT-LNLEDA 411


>Z75540-6|CAN86598.1|  584|Caenorhabditis elegans Hypothetical
           protein F37D6.2c protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 679 CNVCELSF*RNVVINRHL 732
           CN+CEL F  ++ +N H+
Sbjct: 275 CNICELDFGNSIALNTHM 292


>Z75540-3|CAD01084.1|  581|Caenorhabditis elegans Hypothetical
           protein F37D6.2b protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 679 CNVCELSF*RNVVINRHL 732
           CN+CEL F  ++ +N H+
Sbjct: 274 CNICELDFGNSIALNTHM 291


>Z75540-2|CAA99848.1|  582|Caenorhabditis elegans Hypothetical
           protein F37D6.2a protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 679 CNVCELSF*RNVVINRHL 732
           CN+CEL F  ++ +N H+
Sbjct: 275 CNICELDFGNSIALNTHM 292


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +2

Query: 71  NSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENS 223
           N+LD  +Q ++  A++IRK  +  Y        ++ EED  ++   N+E++
Sbjct: 362 NALDRRIQYMIETAMQIRKDKFAAYPAVIEDLDLIEEEDQIIHT-LNLEDA 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,768,209
Number of Sequences: 27780
Number of extensions: 324224
Number of successful extensions: 812
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)