Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1868X
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomy... 56 5e-09
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.6
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ... 27 2.1
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|... 27 2.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 6.4
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 6.4
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 25 6.4
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 25 6.4
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 8.5
>SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 133
Score = 55.6 bits (128), Expect = 5e-09
Identities = 22/57 (38%), Positives = 37/57 (64%)
Frame = +2
Query: 83 ETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAER 253
E ++ L E K + +YCPYSNF+VGA +++++ + G N+EN++ +CAER
Sbjct: 4 EDIEKLFQEVKKSLQYSYCPYSNFAVGACVVSDDKNTYIYGANVENASYGNCICAER 60
Score = 50.0 bits (114), Expect = 3e-07
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +1
Query: 241 VCRE-VAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNEFCSSDGDIEIYL 405
+C E VA+ KAV GYTKF + +++ + T PCG+CRQ + EF DI +Y+
Sbjct: 56 ICAERVAITKAVSMGYTKFMAIGVMSAKGRVT-PCGICRQVIREFSK---DINVYM 107
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 71 NSLDETVQNL-LMEAVKIRKRAYCPYSNFSVGAAILTEEDS 190
N+ DE + L L++ R A CP N + A++LT D+
Sbjct: 433 NTADEFTEQLNLLKNEVARLSAICPSPNSGINASVLTNADN 473
>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -2
Query: 238 RWCQSGVLNVASGVHSRIFFGKYSGTNRKIGIRTI 134
+W V G ++ +F G+ TNR++ I+ I
Sbjct: 8 KWTYVKERKVGEGTYAVVFLGRQKETNRRVAIKKI 42
>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 372 ELVEGLPTYPAGRSEFSLMGYYSHTF 295
+LVEG P G S F +GY S F
Sbjct: 408 QLVEGSTVPPIGTSSFDYIGYSSEKF 433
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 265 SQQPPLCTHRWCQSGVLNV 209
S+ PPL ++WCQ G+ N+
Sbjct: 968 SEPPPLLVYKWCQ-GINNL 985
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 295 KCVAIVAHQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRPTMDTVL 432
+C A + ++F+A G+ ++ LNEF +I YLS ++ VL
Sbjct: 224 ECFASIV--QKFSAIGGLIKKALNEFSLYKTNISFYLSNFIVNGVL 267
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 71 NSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTL 229
NS+++ L+ E K+R Y + +L + SR Y ENS L
Sbjct: 273 NSIEDWDYELMFEVAKLRLHGMYKYPRNYTVSDVLFRKVSRQYWPYTSENSVL 325
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 44 MDNFQIVD-FNSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILT 178
M+ +I+D + +DE +++L++++K K Y P+S +LT
Sbjct: 7 METNEILDQLDKIDERNEDILLKSLKASKCTYKPWSREEFLRRLLT 52
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -2
Query: 124 PNFDSFHQQILNSLIQRIKVHDLKIIHCACVCLCRV 17
PNF+ F + I N+ ++ + D + A +C+C++
Sbjct: 500 PNFELFTRSIFNASLKNFNILDER--SQALLCMCQI 533
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,881
Number of Sequences: 5004
Number of extensions: 51746
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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