Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1868X
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919...    29   3.8  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    28   5.0  
12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557...    27   8.7  
12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379     27   8.7  
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518...    27   8.7  

>03_02_0528 +
           9189215-9189330,9190111-9190204,9190654-9190743,
           9191601-9191717,9192187-9192259,9192335-9192453,
           9192569-9192690,9192777-9192953,9193189-9193333,
           9193458-9193636,9193742-9193991
          Length = 493

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 420 HCRPAQVDFDVT--VRTTELVEGLPTYPAGRSEFSL 319
           HC  A   +D+T  ++T  L   L  YP GR+  SL
Sbjct: 214 HCENAHFTYDITSKLKTKFLGNSLEVYPLGRTRVSL 249


>04_04_1571 +
           34504087-34504421,34505002-34505731,34506091-34512077,
           34512493-34513964,34514114-34514377,34514761-34514978,
           34515759-34516030,34516190-34516559,34516578-34516797,
           34516819-34518931,34518941-34519193,34519269-34519401,
           34520597-34521114,34521207-34522115,34522195-34522368,
           34522833-34522882,34523963-34524035,34524413-34524477,
           34524736-34525522,34525622-34525878,34525989-34526109,
           34526315-34526956
          Length = 5320

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 232 TIDVCREVAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNE---FCSSDGDIEIY 402
           +I++C+++ + +    G       + ++  R++  P GV  Q LN+   FC S  D +I 
Sbjct: 816 SINLCKKLPIFRVFDGGSPSSYGFSDLSTSRKYLPPLGVAEQLLNDDFVFCISPSDEDII 875

Query: 403 L 405
           +
Sbjct: 876 M 876


>12_02_1169 -
           26655170-26655332,26655429-26655504,26655603-26655715,
           26655808-26655913,26656001-26656235,26656415-26656573,
           26657279-26657377,26657472-26657568,26657650-26657768,
           26657860-26658000,26658100-26658184,26658287-26658488,
           26659274-26659379
          Length = 566

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 71  NSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDS 190
           ++L E  Q+  +E  K RK A C  S+  VG  +LT   S
Sbjct: 405 DTLIEKKQDTSVEESKRRKAAVCSISSVCVGVVVLTTSAS 444


>12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379
          Length = 881

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 258 SHLSAHIDGVKVEFSMLHPAYILESSSVSIAAPTEKL 148
           S  +AH+DG K++   L   Y+ E   V I  P E++
Sbjct: 141 SECNAHVDGTKID-PRLPALYVEEEKLVGIHGPMEEI 176


>08_02_0110 +
           12650328-12650552,12650827-12651423,12651480-12651857,
           12651997-12652218,12652407-12652483,12652553-12652631,
           12652920-12653105
          Length = 587

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -2

Query: 178 GKYSGTNRKIGIRTIGPFPNFDSFHQQILNSLIQRIKVHDLKIIHCAC 35
           G+   +  +I +R   P P F    +++ ++ IQ I+      IH  C
Sbjct: 510 GQCKNSRERISVRNKWPLPKFPKSERELNDTSIQNIQADMCYFIHREC 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,592,830
Number of Sequences: 37544
Number of extensions: 327080
Number of successful extensions: 849
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)