Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1868X
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61949-3|AAB03151.1|  166|Caenorhabditis elegans Cytidine deamin...    57   1e-08
U64861-1|AAB04993.1|  158|Caenorhabditis elegans Cytidine deamin...    52   4e-07
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associa...    28   4.4  
AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap (death-as...    28   4.4  
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z49127-8|CAD56567.1|  183|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    28   5.9  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    27   7.7  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    27   7.7  

>U61949-3|AAB03151.1|  166|Caenorhabditis elegans Cytidine deaminase
           protein 2 protein.
          Length = 166

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +1

Query: 241 VCRE-VAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRPT 417
           +C E  A+  AV  GYTKF+ +A+V    E  +PCG+CRQ L EF    GD ++ +   +
Sbjct: 61  ICAERSAIVSAVSQGYTKFRAIAVVTELSEPASPCGLCRQFLVEF----GDYKVVVGTAS 116

Query: 418 MDTVLCTKLSHHLPLSFVSIKKDS 489
            + +L T     LP +F     D+
Sbjct: 117 NNKILITSTRALLPFAFTPESLDT 140



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
 Frame = +2

Query: 71  NSLDETVQN--LLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMC 244
           NSL + + +  L+  A    KRA+CPYS F VGAA+LT E   +  GCN+EN++   ++C
Sbjct: 4   NSLPQDISDVELVHLARAAMKRAHCPYSKFPVGAALLT-ESGEIVQGCNVENASYGGTIC 62

Query: 245 AER 253
           AER
Sbjct: 63  AER 65


>U64861-1|AAB04993.1|  158|Caenorhabditis elegans Cytidine deaminase
           protein 1 protein.
          Length = 158

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 25/60 (41%), Positives = 38/60 (63%)
 Frame = +2

Query: 74  SLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAER 253
           +L E  Q L+ +A+   + AYC YSNF VGAA++  +D  +  G N EN++   ++CAER
Sbjct: 7   NLTEFEQQLVDKAIGAMENAYCKYSNFKVGAALVC-DDGEIIIGANHENASYGATICAER 65



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +1

Query: 241 VCRE-VAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRPT 417
           +C E  A+  A+  G+ KFK + +        +PCGVCRQ L EF    GD ++ L   T
Sbjct: 61  ICAERSAIVTALTKGHRKFKYIVVATELEAPCSPCGVCRQVLIEF----GDYKVILGSST 116

Query: 418 MDTVLCTKLSHHLPLSF 468
            D ++ T     LP +F
Sbjct: 117 SDQIIETTTYELLPYAF 133


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical
           protein F46C3.3 protein.
          Length = 2557

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 316 HQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRPTMDTVLCTKLSHHL 456
           HQ   T   G  +QTL  +   + D + +L RPT D+     L+H+L
Sbjct: 730 HQALGTENSGQLQQTLVGYIDINEDAKKFLERPTSDSDATETLTHYL 776


>AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associated
           protein kinase protein.
          Length = 1425

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 130 GLLSLFQFFCWCRYTYRRRFENVRRMQH*ELHFDTIDVCREVAVAKA 270
           GLL   Q  C C  T      N +   H   H+  +D+ R + +A+A
Sbjct: 602 GLLQAVQTLCHCAVTVDSVNANKKTALHLAAHYGHVDIIRVLLLARA 648


>AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap
           (death-associated protein)kinase homolog protein 1
           protein.
          Length = 1425

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 130 GLLSLFQFFCWCRYTYRRRFENVRRMQH*ELHFDTIDVCREVAVAKA 270
           GLL   Q  C C  T      N +   H   H+  +D+ R + +A+A
Sbjct: 602 GLLQAVQTLCHCAVTVDSVNANKKTALHLAAHYGHVDIIRVLLLARA 648


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +2

Query: 71  NSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENS 223
           N+LD  +Q ++  A++IRK  +  Y        ++ EED  ++   N+E++
Sbjct: 362 NALDRRIQYMIETAMQIRKDKFAAYPAVIEDLDLIEEEDQIIHT-LNLEDA 411


>Z49127-8|CAD56567.1|  183|Caenorhabditis elegans Hypothetical
           protein F13D12.10 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 415 TMDTVLCTKLSHHLPLSFVSIKKDSVITYKRIE 513
           T+   LC KLSH L   FVS++  ++  Y+  E
Sbjct: 137 TLVLFLCMKLSHILYKGFVSVRTQNMTRYRITE 169


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +2

Query: 71  NSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENS 223
           N+LD  +Q ++  A++IRK  +  Y        ++ EED  ++   N+E++
Sbjct: 362 NALDRRIQYMIETAMQIRKDKFAAYPAVIEDLDLIEEEDQIIHT-LNLEDA 411


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
            protein F52C9.1a protein.
          Length = 1336

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +1

Query: 244  CREVAVAKAVCDGYTKFKCVAI---VAHQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRP 414
            C  V+ A    D Y +F  +++     HQ +      +  +      SSD  ++++  +P
Sbjct: 1081 CARVSAAVCGVDNY-RFDHLSLCNYTGHQEKIRKLAAISNENSFVSASSDKTVKLWSIKP 1139

Query: 415  TMDTVLC--TKLSHHLPLSFVSIKKDSVI 495
             +D + C  T   H  P+  ++I  D+ I
Sbjct: 1140 ELDEIGCQWTYQKHTRPVHDITILADNSI 1168


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
            protein F52C9.1b protein.
          Length = 1331

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +1

Query: 244  CREVAVAKAVCDGYTKFKCVAI---VAHQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRP 414
            C  V+ A    D Y +F  +++     HQ +      +  +      SSD  ++++  +P
Sbjct: 1081 CARVSAAVCGVDNY-RFDHLSLCNYTGHQEKIRKLAAISNENSFVSASSDKTVKLWSIKP 1139

Query: 415  TMDTVLC--TKLSHHLPLSFVSIKKDSVI 495
             +D + C  T   H  P+  ++I  D+ I
Sbjct: 1140 ELDEIGCQWTYQKHTRPVHDITILADNSI 1168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,197
Number of Sequences: 27780
Number of extensions: 299829
Number of successful extensions: 792
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)