Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1868X
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.0  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   5.3  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   5.3  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   7.0  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   7.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   9.2  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 417 NGYRSMY*TITSSTSFVREY*KG 485
           NG  S   TITS   FVR Y  G
Sbjct: 94  NGKHSYLHTITSPNKFVRLYQDG 116


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 250 EVAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQT 360
           +++V K  C+G+   +    VA    F+  C  CR++
Sbjct: 63  DISVTK--CEGFCNSQVQPSVASTTGFSKECYCCRES 97


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 250 EVAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQT 360
           +++V K  C+G+   +    VA    F+  C  CR++
Sbjct: 63  DISVTK--CEGFCNSQVQPSVASTTGFSKECYCCRES 97


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/31 (25%), Positives = 12/31 (38%)
 Frame = +2

Query: 143 YSNFSVGAAILTEEDSRMYAGCNIENSTLTP 235
           Y N  +   + TE     Y  C ++    TP
Sbjct: 28  YDNVDIDVVLNTERLLNAYVNCLLDQGPCTP 58


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/31 (25%), Positives = 12/31 (38%)
 Frame = +2

Query: 143 YSNFSVGAAILTEEDSRMYAGCNIENSTLTP 235
           Y N  +   + TE     Y  C ++    TP
Sbjct: 28  YDNVDIDVVLNTERLLNAYVNCLLDQGPCTP 58


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 405 QVDFDVTVRTTELVEGLPTYPAGRSEFSLMGYYSH 301
           QVDF    +    V  LP   AG+S  ++    SH
Sbjct: 124 QVDFVADYKIEGKVLLLPVRGAGKSNITMYDLKSH 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,491
Number of Sequences: 438
Number of extensions: 3209
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)