Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1866
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0266 + 15051868-15052286,15052376-15052475,15053540-150535...    28   7.9  
02_03_0109 - 15333228-15334793,15335255-15335392,15335496-153357...    28   7.9  

>08_02_0266 +
           15051868-15052286,15052376-15052475,15053540-15053581,
           15053734-15053930,15055412-15055508,15055604-15055699,
           15056395-15056633,15056728-15056811,15056898-15057185,
           15057658-15057718,15061093-15061362,15061663-15061722
          Length = 650

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -2

Query: 441 LNRTLIKNKFLRRSLNSINVLIETK 367
           +++TL+K+K LRR L    ++IET+
Sbjct: 165 MDQTLVKSKILRRPLEDTWIIIETE 189


>02_03_0109 -
           15333228-15334793,15335255-15335392,15335496-15335771,
           15336357-15336422,15338140-15338487
          Length = 797

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 47  CLSKSYNAI*IQLQYTECSKNLIR 118
           CL + YNAI   ++Y ECS  +++
Sbjct: 305 CLGEKYNAIWCAVEYYECSGEILK 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,003,738
Number of Sequences: 37544
Number of extensions: 171388
Number of successful extensions: 218
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)