Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1866
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.2  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 18  NTNDQSF*SSVYLSLTMQFEYNCNIQSV 101
           NTNDQ + S  YL++   F    NI SV
Sbjct: 369 NTNDQDYSSQNYLTV-HSFPSTLNIPSV 395


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 315 NCYIT*TISLSELNWTASKAFFIMVLKV 232
           NC++T   +   L W AS+   I V++V
Sbjct: 55  NCWVTQIWTDHHLKWNASEFAGIRVIRV 82


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 558 VYSVFLHYIIFLTLRN 511
           +  VFL+Y IF  LRN
Sbjct: 357 IIMVFLYYNIFKALRN 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,916
Number of Sequences: 438
Number of extensions: 2390
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)