Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1865
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    28   1.1  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    27   2.6  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    27   3.5  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    26   6.1  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    26   6.1  
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    26   6.1  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   8.0  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    25   8.0  

>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +1

Query: 268 DLENTLESVQSQVQNLLRGAEKLKERVHTPYYALENQTIMLERVQTTCNLLRHASKILTL 447
           +++NT E++   V+      EKL E + T    LE QT + E+      LL +  K+  L
Sbjct: 614 EIDNTKEALDLSVKERSIQEEKLNESLKTSKTNLEEQTQLAEKYHE--ELLDNQQKLYDL 671

Query: 448 WNKLRTIKDN 477
             +L   K N
Sbjct: 672 RIELDYTKSN 681


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 104 SKFLNDSIKPLVGENLSVTDQVTKLAQGIEKLGKSLEKQVLAKHNDLLTQ 253
           S+ L DS   L G+NLS  DQV +    +  +  S++K++  K   LL +
Sbjct: 326 SQLLLDSTVGLDGKNLSQHDQVLR-EDRLRAIELSVQKEIEEKRRQLLAR 374


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 242 LLTQGVTFPIWKTRWSRYNRKFKTYYVVPKN 334
           L+ +GV  P   +RW +  + FK  Y  P N
Sbjct: 305 LIQEGVRDPFSGSRWQKIVKTFKELYFNPSN 335


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 503 KSMIASFEGLSLMVRSLFHRVNILDACLSRLHVV*TRS 390
           K  +  +EGL+  V +  H V+IL  CL ++ ++  +S
Sbjct: 321 KKALRFYEGLTKRVSANGHAVDILAGCLDQIGIMEMKS 358


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 129 SHWSGKIYQSPIKSLNLPKVSKNSGKAWKSKYWLNTTTF*HRESHFR 269
           S  +G++  SP+KS N+P+       A      LN  T  +R++  R
Sbjct: 188 SQLAGRLSNSPVKSPNMPESGLAKSLAAARNPLLNRPTSFNRQTRIR 234


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = -1

Query: 509 RSKSMIASFEGLSLMVRSLF--HRVNILDA 426
           R KS++AS +GLS+  RSL   H  ++L+A
Sbjct: 78  RDKSLVASIQGLSVDHRSLVYNHYKHLLEA 107


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 247 NTGSHISDLENTLESVQSQVQNLLRGAEKLKERVHT 354
           N   H   +  T ++++  VQ++ R +EKLKER+ T
Sbjct: 458 NLAFHHYGVNATFKALEQLVQSI-RDSEKLKERLET 492


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 184  RYRKTREKLGKASTG*TQRPSNTGSHISDLENTLES---VQSQVQNLLRGAEKLKER 345
            +Y    + +  +S+G  ++     S ISD  N LES   +Q +V   +    K+ ER
Sbjct: 856  KYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESLEELQHEVATRIEQDAKINER 912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,574
Number of Sequences: 5004
Number of extensions: 62575
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)