Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1865
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0325 + 2631637-2631882,2632715-2632788,2632874-2633006,263...    31   1.2  
04_01_0180 + 2034021-2034023,2034741-2035088                           29   2.7  
01_06_0361 + 28733493-28733523,28733743-28733870,28733982-287340...    28   6.3  

>01_01_0325 +
           2631637-2631882,2632715-2632788,2632874-2633006,
           2633091-2633172,2633471-2633580,2633659-2633751,
           2633854-2633904,2634013-2634105,2635257-2636129,
           2636204-2636316,2636436-2636448
          Length = 626

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +1

Query: 349 HTPYY-ALENQTIMLERVQTTCNLLRHASKILTLWNKLRTIKDNPSKEAIILFDLMN*SV 525
           H PY     N+T   E ++   NL   + K+    NK+ T K  PSK  I+ FD M  S 
Sbjct: 519 HIPYLDCWMNRTEDNEYLKLVANL--DSKKVALKVNKVGTDKRKPSKNGILQFDFMRNSD 576

Query: 526 ITI-SKAL 546
           + I  KAL
Sbjct: 577 VHIPEKAL 584


>04_01_0180 + 2034021-2034023,2034741-2035088
          Length = 116

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 238 RPSNTGSHISDLENTLESVQSQVQNLLRGAEKLKERVH 351
           R S     I +L +T+E+++ QVQNL R  E+ K++ H
Sbjct: 36  RISKLNDTIKELNDTIEALERQVQNLTRYKEE-KQKQH 72


>01_06_0361 +
           28733493-28733523,28733743-28733870,28733982-28734044,
           28735074-28735211,28735357-28735494,28735700-28735843,
           28736065-28736175,28736260-28736401,28736469-28736779,
           28737057-28737218,28737313-28737366,28737472-28737546,
           28737636-28737731
          Length = 530

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 537 QGIIILEEILSAVNQRRNELLNESTNSLQSSLLNGDKAKL 656
           Q + +LE  L+ V + +NE +++ +     +++NG KAKL
Sbjct: 474 QFLDVLERELAKVEKNKNEFVSDFSQEDYDAIVNGWKAKL 513


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,793,220
Number of Sequences: 37544
Number of extensions: 327772
Number of successful extensions: 779
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)