Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1865
(707 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT003257-1|AAO25014.1| 751|Drosophila melanogaster LD24842p pro... 49 7e-06
AE014134-2855|AAN10990.1| 751|Drosophila melanogaster CG6549-PC... 49 7e-06
AE014134-2854|AAF53619.1| 751|Drosophila melanogaster CG6549-PA... 49 7e-06
AY051730-1|AAK93154.1| 550|Drosophila melanogaster LD25919p pro... 29 6.2
AF186472-1|AAF01416.1| 1409|Drosophila melanogaster condensin su... 29 6.2
AF185287-1|AAF13306.1| 1409|Drosophila melanogaster XCAP-C/SMC4 ... 29 6.2
AF160943-1|AAD46883.2| 1012|Drosophila melanogaster LD20207p pro... 29 6.2
AE014134-2761|AAF53560.1| 1409|Drosophila melanogaster CG11397-P... 29 6.2
AE014134-2421|AAF53348.1| 250|Drosophila melanogaster CG7968-PA... 29 6.2
AE014134-631|AAF51089.1| 405|Drosophila melanogaster CG8853-PA ... 29 8.2
>BT003257-1|AAO25014.1| 751|Drosophila melanogaster LD24842p
protein.
Length = 751
Score = 48.8 bits (111), Expect = 7e-06
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +1
Query: 256 SHISDLENTLESVQSQVQNLLRGAEKLKERVHTPYYALENQTIMLERVQTTCNLLRHASK 435
+H + L ++ VQ + +LK +V T Y +ENQT +L R+ +LLR A
Sbjct: 65 THAGRFDAALNALAEDVQRVRETGHRLKNQVDTQYQQVENQTQVLGRLHDVSHLLRSAGT 124
Query: 436 ILTLWNKLRTIKD 474
+L+L KL+ KD
Sbjct: 125 LLSLTAKLKATKD 137
>AE014134-2855|AAN10990.1| 751|Drosophila melanogaster CG6549-PC,
isoform C protein.
Length = 751
Score = 48.8 bits (111), Expect = 7e-06
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +1
Query: 256 SHISDLENTLESVQSQVQNLLRGAEKLKERVHTPYYALENQTIMLERVQTTCNLLRHASK 435
+H + L ++ VQ + +LK +V T Y +ENQT +L R+ +LLR A
Sbjct: 65 THAGRFDAALNALAEDVQRVRETGHRLKNQVDTQYQQVENQTQVLGRLHDVSHLLRSAGT 124
Query: 436 ILTLWNKLRTIKD 474
+L+L KL+ KD
Sbjct: 125 LLSLTAKLKATKD 137
>AE014134-2854|AAF53619.1| 751|Drosophila melanogaster CG6549-PA,
isoform A protein.
Length = 751
Score = 48.8 bits (111), Expect = 7e-06
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +1
Query: 256 SHISDLENTLESVQSQVQNLLRGAEKLKERVHTPYYALENQTIMLERVQTTCNLLRHASK 435
+H + L ++ VQ + +LK +V T Y +ENQT +L R+ +LLR A
Sbjct: 65 THAGRFDAALNALAEDVQRVRETGHRLKNQVDTQYQQVENQTQVLGRLHDVSHLLRSAGT 124
Query: 436 ILTLWNKLRTIKD 474
+L+L KL+ KD
Sbjct: 125 LLSLTAKLKATKD 137
>AY051730-1|AAK93154.1| 550|Drosophila melanogaster LD25919p
protein.
Length = 550
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 80 EIENDEFYSKFLNDSIKPLVGENLSVTDQVTKLAQGIEKLGKSL 211
EI+N Y N+S+KP+ + V Q+ KLA + L L
Sbjct: 41 EIQNQ--YDTLRNESVKPVEAKIKKVNSQIEKLAANVRSLNVGL 82
>AF186472-1|AAF01416.1| 1409|Drosophila melanogaster condensin subunit
SMC4 protein.
Length = 1409
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 80 EIENDEFYSKFLNDSIKPLVGENLSVTDQVTKLAQGIEKLGKSL 211
EI+N Y N+S+KP+ + V Q+ KLA + L L
Sbjct: 900 EIQNQ--YDTLRNESVKPVEAKIKKVNSQIEKLAANVRSLNVGL 941
>AF185287-1|AAF13306.1| 1409|Drosophila melanogaster XCAP-C/SMC4
homolog Gluon protein.
Length = 1409
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 80 EIENDEFYSKFLNDSIKPLVGENLSVTDQVTKLAQGIEKLGKSL 211
EI+N Y N+S+KP+ + V Q+ KLA + L L
Sbjct: 900 EIQNQ--YDTLRNESVKPVEAKIKKVNSQIEKLAANVRSLNVGL 941
>AF160943-1|AAD46883.2| 1012|Drosophila melanogaster LD20207p protein.
Length = 1012
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 80 EIENDEFYSKFLNDSIKPLVGENLSVTDQVTKLAQGIEKLGKSL 211
EI+N Y N+S+KP+ + V Q+ KLA + L L
Sbjct: 900 EIQNQ--YDTLRNESVKPVEAKIKKVNSQIEKLAANVRSLNVGL 941
>AE014134-2761|AAF53560.1| 1409|Drosophila melanogaster CG11397-PA
protein.
Length = 1409
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 80 EIENDEFYSKFLNDSIKPLVGENLSVTDQVTKLAQGIEKLGKSL 211
EI+N Y N+S+KP+ + V Q+ KLA + L L
Sbjct: 900 EIQNQ--YDTLRNESVKPVEAKIKKVNSQIEKLAANVRSLNVGL 941
>AE014134-2421|AAF53348.1| 250|Drosophila melanogaster CG7968-PA
protein.
Length = 250
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 59 EAKDVCVEIENDEFYSKFLNDSIKPLVGENLSVTDQVTKLAQGIEKL 199
EAK N Y+KF+ND I + ++ + D T+++Q +E+L
Sbjct: 171 EAKSQTTGFMNSRLYTKFINDLIVEYL--DIMINDNPTEVSQFMEEL 215
>AE014134-631|AAF51089.1| 405|Drosophila melanogaster CG8853-PA
protein.
Length = 405
Score = 28.7 bits (61), Expect = 8.2
Identities = 14/58 (24%), Positives = 34/58 (58%)
Frame = +2
Query: 80 EIENDEFYSKFLNDSIKPLVGENLSVTDQVTKLAQGIEKLGKSLEKQVLAKHNDLLTQ 253
++E E K LN+ +KPL+ + ++ +++ + +L + +EKQ A+ N+++ +
Sbjct: 279 DLEKIESREKHLNNELKPLIQQFKELSIELSTIQYAQNQLQEDMEKQT-AELNEVMME 335
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,011,890
Number of Sequences: 53049
Number of extensions: 588006
Number of successful extensions: 1451
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3128965752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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