Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1865
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos...    29   3.3  
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    29   3.3  
AC199158-8|ABO33283.1|  439|Caenorhabditis elegans Hypothetical ...    28   5.7  
AC199158-4|ABO33286.1|  439|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
            protein F20G4.3 protein.
          Length = 2003

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +3

Query: 549  ILEEILSAVNQRRNELLNESTNSLQSSLLNGDKAK 653
            ++EE + A NQ++ E LNE+ + L+   ++ DKAK
Sbjct: 1203 VVEE-MKAQNQKKIEELNETIDQLKRQKISADKAK 1236


>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
            F20G4.3 protein.
          Length = 2003

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +3

Query: 549  ILEEILSAVNQRRNELLNESTNSLQSSLLNGDKAK 653
            ++EE + A NQ++ E LNE+ + L+   ++ DKAK
Sbjct: 1203 VVEE-MKAQNQKKIEELNETIDQLKRQKISADKAK 1236


>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
            heavy chain II protein.
          Length = 2003

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +3

Query: 549  ILEEILSAVNQRRNELLNESTNSLQSSLLNGDKAK 653
            ++EE + A NQ++ E LNE+ + L+   ++ DKAK
Sbjct: 1203 VVEE-MKAQNQKKIEELNETIDQLKRQKISADKAK 1236


>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
            protein Y51A2D.15 protein.
          Length = 1222

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +1

Query: 283  LESVQSQVQNLLRGAEKLKERVHTPYYALENQTIMLERVQTTCNLLRHASKIL 441
            ++  Q Q+  L R  EKL++++   Y  +EN+    ER Q    L++ A+K L
Sbjct: 1062 MKDFQDQLSALRRHKEKLEDKIMDQYRTMENKKSTPERKQP---LVKRAAKAL 1111


>AC199158-8|ABO33283.1|  439|Caenorhabditis elegans Hypothetical
           protein AC8.10 protein.
          Length = 439

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 247 NTGSHISDLENTLESVQSQVQNLLRGAEKLKERVHTPYYAL 369
           NTG H+S  E+ L+++QSQ  + ++     K+++H   + L
Sbjct: 177 NTGPHLSTTEDMLKALQSQNPDRVKYWIDAKQQLHFNIFTL 217


>AC199158-4|ABO33286.1|  439|Caenorhabditis elegans Hypothetical
           protein AC8.3 protein.
          Length = 439

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 247 NTGSHISDLENTLESVQSQVQNLLRGAEKLKERVHTPYYAL 369
           NTG H+S  E+ L+++QSQ  + ++     K+++H   + L
Sbjct: 177 NTGPHLSTTEDMLKALQSQNPDRVKYWIDAKQQLHFNIFTL 217


>Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical
           protein ZK829.10 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 185 GIEKLGKSLEKQVLAKHNDLLTQGVTFPIWKTRWS 289
           G++ +   + + +    ND  ++  T+PIWK RW+
Sbjct: 460 GLDTIYGDIHELMGQPSNDQWSRAYTWPIWKWRWT 494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,752,310
Number of Sequences: 27780
Number of extensions: 333987
Number of successful extensions: 922
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)