Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1865
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    23   2.1  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    23   2.1  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    23   2.1  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    23   2.1  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    23   2.1  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    23   2.1  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    23   2.1  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    23   2.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.6  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   8.7  

>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 375 SDYYARTSSNNM*SAKTCIQNINSVEQTP 461
           S+Y    ++NN  + K    NIN +EQ P
Sbjct: 92  SNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 375 SDYYARTSSNNM*SAKTCIQNINSVEQTP 461
           S+Y    ++NN  + K    NIN +EQ P
Sbjct: 92  SNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 375 SDYYARTSSNNM*SAKTCIQNINSVEQTP 461
           S+Y    ++NN  + K    NIN +EQ P
Sbjct: 92  SNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 375 SDYYARTSSNNM*SAKTCIQNINSVEQTP 461
           S+Y    ++NN  + K    NIN +EQ P
Sbjct: 92  SNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 375 SDYYARTSSNNM*SAKTCIQNINSVEQTP 461
           S+Y    ++NN  + K    NIN +EQ P
Sbjct: 92  SNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 375 SDYYARTSSNNM*SAKTCIQNINSVEQTP 461
           S+Y    ++NN  + K    NIN +EQ P
Sbjct: 92  SNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 375 SDYYARTSSNNM*SAKTCIQNINSVEQTP 461
           S+Y    ++NN  + K    NIN +EQ P
Sbjct: 92  SNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 375 SDYYARTSSNNM*SAKTCIQNINSVEQTP 461
           S+Y    ++NN  + K    NIN +EQ P
Sbjct: 92  SNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 282 RVFQIGNVTPCVRRSLCLASTCFSKLFP 199
           R+F  G+V   +R SL L+     KL+P
Sbjct: 141 RIFPNGSVLYSIRISLTLSCPMNLKLYP 168


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 282 RVFQIGNVTPCVRRSLCLASTCFSKLFP 199
           R+F  G+V   +R SL L+     KL+P
Sbjct: 141 RIFPNGSVLYSIRISLTLSCPMNLKLYP 168


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 485 FEGLSLMVRSLFHRVNILDACLS 417
           F  ++L  ++LF+ VN++  C+S
Sbjct: 226 FFNITLRRKTLFYTVNLIVPCVS 248


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 216 FSKLFPSFSIPWASLVT*SVTDKFSPTSGFI 124
           F  L  +++IPWA +    V  +F P  GF+
Sbjct: 165 FIVLIWTYTIPWALMPVMGVWGRFVP-EGFL 194


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 396 SSNNM*SAKTCIQNINSVEQTP 461
           ++NN  + K    NIN +EQ P
Sbjct: 97  NNNNYNNYKKLYYNINYIEQVP 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,809
Number of Sequences: 438
Number of extensions: 4070
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)