Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1864X
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0042 + 295608-296222,298479-298925 101 3e-22
06_01_0033 - 346273-347355 96 1e-20
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 44 1e-04
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 42 3e-04
05_07_0163 - 28094574-28094726,28095248-28095382,28095771-280959... 36 0.027
04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654... 36 0.027
08_01_0567 - 5040389-5040631,5042124-5042264 34 0.063
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 32 0.25
03_05_0267 - 22538631-22539452 31 0.59
03_01_0012 - 101584-101898,102274-102531,102932-103474 31 0.78
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 31 0.78
06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970 30 1.0
03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822... 29 2.4
10_08_0925 + 21604871-21605021,21605562-21605881,21606899-216078... 29 3.1
05_05_0252 - 23621592-23621912,23621958-23622317,23622979-236230... 28 4.1
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 28 4.1
07_03_1750 - 29207692-29208225 28 5.5
07_01_0743 + 5678086-5678098,5678436-5678560,5678666-5678800,567... 28 5.5
06_01_0599 - 4327671-4330034 28 5.5
02_05_1008 - 33461225-33462334 28 5.5
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 27 7.2
12_02_0063 + 13098519-13099585,13099759-13099906 27 7.2
07_03_1721 - 29023979-29025295 27 7.2
07_01_0917 + 7735696-7735896,7735907-7736404,7736481-7736813,773... 27 7.2
07_01_0088 + 684471-685154,685271-685834,685938-686222 27 7.2
07_01_0086 + 672173-673603 27 7.2
03_02_0885 - 12169913-12170497,12170593-12170943 27 7.2
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619... 27 7.2
01_05_0161 - 18757122-18757331,18757931-18758488 27 9.6
>02_01_0042 + 295608-296222,298479-298925
Length = 353
Score = 101 bits (243), Expect = 3e-22
Identities = 44/85 (51%), Positives = 63/85 (74%)
Frame = +2
Query: 263 KIQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVI 442
++ S TD ++T GS + +VTAG RQ GESRL+L+QRN + ++I+P L ++SP+ +L+I
Sbjct: 95 RLVSDTDLAVTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLLI 154
Query: 443 ASNPVDILTYVTWKISGXPKHRSSG 517
SNPVD+LTYV WK+SG P R G
Sbjct: 155 VSNPVDVLTYVAWKLSGFPASRVIG 179
Score = 68.1 bits (159), Expect = 4e-12
Identities = 31/60 (51%), Positives = 47/60 (78%)
Frame = +3
Query: 99 SKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMMDLQHGSAFMGTPRSNLV 278
+K++++G G VGMA A ++LT+++ + IALVD + DKL+GEM+DLQH +AF+ PR LV
Sbjct: 40 TKISVIGAGNVGMAIAQTILTRDMADEIALVDAVPDKLRGEMLDLQHAAAFL--PRVRLV 97
>06_01_0033 - 346273-347355
Length = 360
Score = 96.3 bits (229), Expect = 1e-20
Identities = 43/84 (51%), Positives = 60/84 (71%)
Frame = +2
Query: 266 IQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIA 445
I S T+ S+T S + +VTAG RQ GE+RL+L+QRN + ++I+P + SP+++LVI
Sbjct: 95 IVSGTEVSLTRSSDLVIVTAGARQIPGETRLNLLQRNVSLFRKIVPAAAEASPESVLVIV 154
Query: 446 SNPVDILTYVTWKISGXPKHRSSG 517
SNPVD+LTYV WK+SG P R G
Sbjct: 155 SNPVDVLTYVAWKLSGFPASRVIG 178
Score = 69.7 bits (163), Expect = 1e-12
Identities = 30/59 (50%), Positives = 47/59 (79%)
Frame = +3
Query: 102 KVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMMDLQHGSAFMGTPRSNLV 278
K++++G G VGMA A ++LTQ++ + I L+D +ADK++GEM+DLQH +AF+ PR N+V
Sbjct: 40 KISVIGAGNVGMAIAQTILTQDLADEIVLIDAVADKVRGEMLDLQHAAAFL--PRVNIV 96
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +2
Query: 299 GSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNPVD 460
GS I ++ AGV ++ G +R DL N ++K + + KY P+ ++ + SNPV+
Sbjct: 95 GSDIVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPNALVNMISNPVN 148
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +2
Query: 299 GSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNPVD 460
GS + ++ AGV ++ G +R DL N ++K + + KY P+ ++ + SNPV+
Sbjct: 94 GSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNPVN 147
>05_07_0163 -
28094574-28094726,28095248-28095382,28095771-28095923,
28096010-28096208,28096312-28096349,28096849-28097020,
28097666-28097788,28097869-28098284
Length = 462
Score = 35.5 bits (78), Expect = 0.027
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -1
Query: 144 LRPSQPDRPRQWS----PCSKFRPPSRARAGTASSGTPSCGSVSVPWDWSR 4
L PS P RPR S C+ R PS + + S PS + + PW W R
Sbjct: 13 LSPSPPPRPRHHSIKHLACAASRSPSPGPSSSRSLALPSPSASASPWPWPR 63
>04_04_0672 +
27164628-27164792,27164903-27164965,27165298-27165408,
27165454-27165537,27166081-27166194,27166901-27167494,
27167604-27167675,27167761-27167997
Length = 479
Score = 35.5 bits (78), Expect = 0.027
Identities = 29/71 (40%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 38 QDGVPEEAVPARAREGGRNLEQGDHCRGRSGWDGRSFLYADAECYE*--HRSSRHDG*QI 211
+D P PAR E GR GD R RS W + E E HR+SR DG Q
Sbjct: 27 EDDAPRRHRPAREEEEGR----GDE-RSRSTWAEVVSDHKGGEAEERPDHRNSRRDGRQ- 80
Query: 212 ERRDDGPAARI 244
ERR+DG R+
Sbjct: 81 ERREDGDWERV 91
>08_01_0567 - 5040389-5040631,5042124-5042264
Length = 127
Score = 34.3 bits (75), Expect = 0.063
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Frame = +2
Query: 350 SRLDLVQRN--TDVLKQIIPQLIKYSPDTILVIASNPV--DILTYV 475
++L+L++ N +L +I+P L + SP+ LV+ S+P D+LTYV
Sbjct: 3 TKLELMRSNYLKKLLTEIVPALAENSPEAALVVVSDPPVDDVLTYV 48
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 266 IQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKY-SPDTILVI 442
+ +S + G + +V G +R+G R DL+ +N + K L ++ +P+ +++
Sbjct: 106 VATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAAPNCKVLV 165
Query: 443 ASNPVD 460
+NP +
Sbjct: 166 VANPAN 171
>03_05_0267 - 22538631-22539452
Length = 273
Score = 31.1 bits (67), Expect = 0.59
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 141 RPSQPDRPRQWSPCSKFRPPSRARAGTASSGTPS 40
R S P RPR W PCS PP+ A + PS
Sbjct: 171 RASPPARPRWW-PCSPSSPPASPSPSPARTSPPS 203
>03_01_0012 - 101584-101898,102274-102531,102932-103474
Length = 371
Score = 30.7 bits (66), Expect = 0.78
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 439 HQYCVRTVLYQLRDYLFKNIGVSLHEIETRFTFALSNTSSNHADLRA 299
H R L + +F N+G + I T+ LS + HADL+A
Sbjct: 311 HYTATRDELLESAGEVFANVGSGVLRIRVNHTYPLSQAARAHADLQA 357
>02_05_1331 +
35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 430 CVRTVLYQLRDYLFKNIGVSLHEIETRFTFALSNTSSNHADLRASCY 290
CVR + +LRDY G S ++E F + N D+ SCY
Sbjct: 630 CVRALKNELRDYSANEWGDSKLKLEPEPIFIIDIIEENGEDIVQSCY 676
>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
Length = 371
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -1
Query: 141 RPSQPDRPRQWSPCSKFRPPSRA--RAGTASSGTPSCGSVS 25
RP R SPCS ++P RA ASS PS GS S
Sbjct: 109 RPDPIGRSASPSPCSSYQPSPRASYNPSPASSSFPSSGSSS 149
>03_06_0345 -
33281126-33281783,33281872-33282063,33282175-33282217,
33282751-33282874,33282966-33283058,33284484-33284685,
33284751-33284857,33285462-33285543,33285629-33285666,
33285751-33285837,33286324-33286434,33286554-33286904
Length = 695
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 147 KLRPSQPDRPRQWSPCSKFRPPSRARAGTASSGTPSCGSVS 25
K+ P P PRQ + RPP+ A AG TP C V+
Sbjct: 50 KVPPPPPPPPRQ----ERARPPAGAAAGEEEETTPKCRVVT 86
>10_08_0925 +
21604871-21605021,21605562-21605881,21606899-21607897,
21608085-21608126,21608190-21608249,21608915-21608959
Length = 538
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 489 LIFHVTYVRISTGLLAITNIVSGLYFISCGIICLRT 382
++F +T+V T L + I SG +F G ICL T
Sbjct: 435 VVFLMTFVIGQTFLAVLCRIKSGTFFFFAGWICLMT 470
>05_05_0252 -
23621592-23621912,23621958-23622317,23622979-23623059,
23623262-23623633
Length = 377
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 105 PCSKFRPPSRARAGTASSGTPSCGSVSVPWDWSR 4
P + RPP AG+A + P G++ VP WSR
Sbjct: 258 PITYVRPPRHEAAGSAPA--PEEGAIIVPAPWSR 289
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +3
Query: 84 VDETWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMMDLQHGSAFMGTP 263
+ T KV I+G G G+AAA + N + V AD++ G MM +G M T
Sbjct: 1792 LQRTGKKVAIIGSGPAGLAAADQL---NKMGHFVTVFERADRIGGLMM---YGVPNMKTD 1845
Query: 264 RSNLVR 281
+ +V+
Sbjct: 1846 KIEIVQ 1851
>07_03_1750 - 29207692-29208225
Length = 177
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 162 ASA*RKLRPSQPDRPRQWSPCSKFRPPSRARAGTASSGTPSCGSVSVP 19
A A R++R P P P + RPP ++A P C ++ P
Sbjct: 89 ACALRRVRLGAPPPPPAARPAPRSRPPLASKAKVLGRLVPGCRKLAFP 136
>07_01_0743 +
5678086-5678098,5678436-5678560,5678666-5678800,
5679128-5679200,5679581-5679654,5680292-5680396,
5680637-5680881,5680965-5681052,5681202-5681244,
5681319-5681475,5681648-5681776,5682012-5682084,
5682281-5682445,5682530-5682544,5682651-5682780,
5684517-5684651,5684880-5684945,5685088-5685170,
5685503-5685549,5685736-5685814,5685914-5686006
Length = 690
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 54 KKLFQPVHEKVDETWSKVTIVGVGQVGMAAAFSMLTQ 164
K LF P E KV I+G G GM+ A +L Q
Sbjct: 7 KGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQ 43
>06_01_0599 - 4327671-4330034
Length = 787
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 42 MESLKKLFQPVHEKVDETWSKVTIVGVGQVGMA-AAFSMLTQNVTNNI 182
MES +K F + EK E+W+ + I G Q G+ A ++ Q V N+
Sbjct: 364 MESARKAFDTMPEKTMESWNAM-ISGYAQNGLTEMAVALFEQMVKLNV 410
>02_05_1008 - 33461225-33462334
Length = 369
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 87 PPSRARAGTASSGTPSCGSVSVP 19
PPS A + T+SSG+ S G V P
Sbjct: 54 PPSSAPSSTSSSGSSSLGGVPTP 76
>12_02_0792 -
23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 448 TGDHQYCVRTVLYQLRDYLFKNIGVSLHEIETRFTFALSNTSSNHADL 305
T Q RTV QL D L KN+G+ ++ R + SN++S D+
Sbjct: 823 TSKGQTSDRTVSSQLEDLLDKNLGLGPTKVLGRSSLLSSNSASVADDI 870
>12_02_0063 + 13098519-13099585,13099759-13099906
Length = 404
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -1
Query: 138 PSQPDRPRQWSPCSKFRPPSRARAGTASS--GTPSCGSVSVP 19
PSQ P Q P F PP+ A + T S TP G VP
Sbjct: 258 PSQHHPPFQTYPTDPFEPPAPAASVTQPSVPATPEQGPAYVP 299
>07_03_1721 - 29023979-29025295
Length = 438
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 461 YPRGYWRSPILCPDCTLSAA 402
+P G W SP + P+C++SA+
Sbjct: 314 WPNGAWSSPWIQPNCSVSAS 333
>07_01_0917 +
7735696-7735896,7735907-7736404,7736481-7736813,
7736991-7737314,7737367-7737836,7738165-7738447,
7738527-7738640
Length = 740
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 117 RQWSPCSKFRPPSRARAGTASSGTPSCGSVSVP 19
++WS + PPS+ G S CG S+P
Sbjct: 108 QRWSRSTSSTPPSQNHLGNTHSSPDPCGMSSMP 140
>07_01_0088 + 684471-685154,685271-685834,685938-686222
Length = 510
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 96 WSKVTIVGVGQVGMAAA 146
W KV +VG G G+AAA
Sbjct: 14 WKKVCVVGAGMAGLAAA 30
>07_01_0086 + 672173-673603
Length = 476
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 81 KVDETWSKVTIVGVGQVGMAAA 146
K+ W KV +VG G G+AAA
Sbjct: 9 KLPAQWKKVCVVGGGMAGLAAA 30
>03_02_0885 - 12169913-12170497,12170593-12170943
Length = 311
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 32 EPQDGVPEEAVPARAREGGRNLEQGD 109
E ++G EEA+P+RA GR+ +G+
Sbjct: 55 ESEEGEREEALPSRAGSDGRSTARGE 80
>02_02_0028 +
6196453-6196512,6196936-6197320,6197843-6197925,
6198060-6198183,6198404-6198523,6198595-6198755,
6198999-6199157,6199272-6199434,6199604-6199729,
6199775-6199900,6200400-6200764,6201204-6201404,
6201685-6201794,6201919-6202003,6202553-6202681,
6202763-6202868,6202984-6203072,6203172-6203474
Length = 964
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -3
Query: 367 HEIETRFTFALSNTSSNHADLRASCYRIIRTRLDLGVPMNADPCCRSIISPF 212
+ ++ + FA N + A L ASC+ +RT D + + C S+ F
Sbjct: 428 YSVQFVYYFAYMNLQISFAFLTASCFSSVRTATDYEIYFDYLAYCASVTGYF 479
>01_05_0161 - 18757122-18757331,18757931-18758488
Length = 255
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -1
Query: 255 P*MLIRAAGPSSLLSICQPSCLLERCYS*HSASA*RKLRPSQPDRPRQWSPCSKFRPPS 79
P + +R+A ++ + C + + +S + R+LRP P R R+ +RPPS
Sbjct: 118 PPLPLRSANAAAQPAACSSTAVASPFHSAGHRALDRQLRPPAPLRRRRCHLALLYRPPS 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,049,264
Number of Sequences: 37544
Number of extensions: 340985
Number of successful extensions: 1162
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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