Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1864X
(540 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49127-1|CAA88944.1| 333|Caenorhabditis elegans Hypothetical pr... 135 2e-32
U15420-1|AAA67063.1| 333|Caenorhabditis elegans lactate dehydro... 135 2e-32
L43563-1|AAC41613.1| 333|Caenorhabditis elegans L-lactate dehyd... 135 2e-32
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ... 29 2.1
Z93374-9|CAC70078.1| 116|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF273796-1|AAG15144.1| 116|Caenorhabditis elegans nuclear recep... 29 2.8
Z93374-8|CAB07555.1| 359|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z92834-12|CAB07392.5| 424|Caenorhabditis elegans Hypothetical p... 28 3.7
Z81569-2|CAB04602.4| 424|Caenorhabditis elegans Hypothetical pr... 28 3.7
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 28 3.7
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 28 3.7
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 28 3.7
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 4.9
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 4.9
AC006829-1|AAF60923.1| 258|Caenorhabditis elegans Hypothetical ... 28 4.9
Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical pr... 27 6.5
U41558-2|AAK39245.2| 457|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF026215-1|AAB71319.1| 352|Caenorhabditis elegans Serpentine re... 27 6.5
Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical pr... 27 8.6
U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domai... 27 8.6
AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha ... 27 8.6
>Z49127-1|CAA88944.1| 333|Caenorhabditis elegans Hypothetical
protein F13D12.2 protein.
Length = 333
Score = 135 bits (326), Expect = 2e-32
Identities = 58/84 (69%), Positives = 72/84 (85%)
Frame = +2
Query: 266 IQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIA 445
+++ TDYSITAGSK+CVVTAG RQREGE+RL LVQRN ++ K IIPQL+KYSPDT +++
Sbjct: 77 VKADTDYSITAGSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVV 136
Query: 446 SNPVDILTYVTWKISGXPKHRSSG 517
SNPVD+LTYVTWK+SG P+ R G
Sbjct: 137 SNPVDVLTYVTWKLSGLPRERVFG 160
Score = 89.4 bits (212), Expect = 1e-18
Identities = 40/68 (58%), Positives = 54/68 (79%)
Frame = +3
Query: 48 SLKKLFQPVHEKVDETWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMM 227
++K++F + V+ + KVT+VGVGQVGMA A+S+L QN+ N + LVD++ADKLKGEMM
Sbjct: 4 TIKEVFAEIAAPVENSHGKVTVVGVGQVGMACAYSILQQNLANELCLVDVVADKLKGEMM 63
Query: 228 DLQHGSAF 251
DLQHG AF
Sbjct: 64 DLQHGLAF 71
>U15420-1|AAA67063.1| 333|Caenorhabditis elegans lactate
dehydrogenase protein.
Length = 333
Score = 135 bits (326), Expect = 2e-32
Identities = 58/84 (69%), Positives = 72/84 (85%)
Frame = +2
Query: 266 IQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIA 445
+++ TDYSITAGSK+CVVTAG RQREGE+RL LVQRN ++ K IIPQL+KYSPDT +++
Sbjct: 77 VKADTDYSITAGSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVV 136
Query: 446 SNPVDILTYVTWKISGXPKHRSSG 517
SNPVD+LTYVTWK+SG P+ R G
Sbjct: 137 SNPVDVLTYVTWKLSGLPRERVFG 160
Score = 89.4 bits (212), Expect = 1e-18
Identities = 40/68 (58%), Positives = 54/68 (79%)
Frame = +3
Query: 48 SLKKLFQPVHEKVDETWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMM 227
++K++F + V+ + KVT+VGVGQVGMA A+S+L QN+ N + LVD++ADKLKGEMM
Sbjct: 4 TIKEVFAEIAAPVENSHGKVTVVGVGQVGMACAYSILQQNLANELCLVDVVADKLKGEMM 63
Query: 228 DLQHGSAF 251
DLQHG AF
Sbjct: 64 DLQHGLAF 71
>L43563-1|AAC41613.1| 333|Caenorhabditis elegans L-lactate
dehydrogenase protein.
Length = 333
Score = 135 bits (326), Expect = 2e-32
Identities = 58/84 (69%), Positives = 72/84 (85%)
Frame = +2
Query: 266 IQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIA 445
+++ TDYSITAGSK+CVVTAG RQREGE+RL LVQRN ++ K IIPQL+KYSPDT +++
Sbjct: 77 VKADTDYSITAGSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVV 136
Query: 446 SNPVDILTYVTWKISGXPKHRSSG 517
SNPVD+LTYVTWK+SG P+ R G
Sbjct: 137 SNPVDVLTYVTWKLSGLPRERVFG 160
Score = 89.4 bits (212), Expect = 1e-18
Identities = 40/68 (58%), Positives = 54/68 (79%)
Frame = +3
Query: 48 SLKKLFQPVHEKVDETWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMM 227
++K++F + V+ + KVT+VGVGQVGMA A+S+L QN+ N + LVD++ADKLKGEMM
Sbjct: 4 TIKEVFAEIAAPVENSHGKVTVVGVGQVGMACAYSILQQNLANELCLVDVVADKLKGEMM 63
Query: 228 DLQHGSAF 251
DLQHG AF
Sbjct: 64 DLQHGLAF 71
>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
protein Y67D8A.1 protein.
Length = 1020
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -2
Query: 233 QVHHLSFQFVSHHVY*SDVIRNILRQHRESCGHPNLTDPDNGHLAPS 93
+++ LS Q HH++ S+ I IL RE H DP N HL S
Sbjct: 190 ELYALSHQEFGHHLW-SNAIYIILMLKREGLIHSGDIDPINRHLPAS 235
>Z93374-9|CAC70078.1| 116|Caenorhabditis elegans Hypothetical
protein C06C6.5b protein.
Length = 116
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 144 LRPSQPDRPRQWSPCSKFRPPSRARAGTASSGTPSCGSVS-VPWDWS 7
+ P + R+ P K +PPS + A T+SS TP +S +P ++S
Sbjct: 65 MNPEKVQEKRERHPPKKNKPPSISEALTSSSSTPPSLPISQLPVNYS 111
>AF273796-1|AAG15144.1| 116|Caenorhabditis elegans nuclear receptor
NHR-50 protein.
Length = 116
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 144 LRPSQPDRPRQWSPCSKFRPPSRARAGTASSGTPSCGSVS-VPWDWS 7
+ P + R+ P K +PPS + A T+SS TP +S +P ++S
Sbjct: 65 MNPEKVQEKRERHPPKKNKPPSISEALTSSSSTPPSLPISQLPVNYS 111
>Z93374-8|CAB07555.1| 359|Caenorhabditis elegans Hypothetical
protein C06C6.5a protein.
Length = 359
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 144 LRPSQPDRPRQWSPCSKFRPPSRARAGTASSGTP 43
+ P + R+ P K +PPS + A T+SS TP
Sbjct: 65 MNPEKVQEKRERHPPKKNKPPSISEALTSSSSTP 98
>Z92834-12|CAB07392.5| 424|Caenorhabditis elegans Hypothetical
protein K11B4.1 protein.
Length = 424
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +2
Query: 395 IIPQLIKYSPDTILVIASNPVD 460
I+ L+KY P+TI+ +A++P++
Sbjct: 112 IVRLLLKYQPETIITLANDPIN 133
>Z81569-2|CAB04602.4| 424|Caenorhabditis elegans Hypothetical
protein K11B4.1 protein.
Length = 424
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +2
Query: 395 IIPQLIKYSPDTILVIASNPVD 460
I+ L+KY P+TI+ +A++P++
Sbjct: 112 IVRLLLKYQPETIITLANDPIN 133
>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying
defective protein 27,isoform b protein.
Length = 1124
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -1
Query: 201 PSCLLERCYS*HSASA*RKLRPSQPDRPRQWSPCSKFRPPSRARAGTASSGTPSCGSVSV 22
P+CL +R S S R + R R +P S P R T S+G P+ +
Sbjct: 480 PACLFKRSNSDEEESGVRTRAGKKEQRRR--TPSSMSETPDRRSPSTVSNGAPNLTAEET 537
Query: 21 P 19
P
Sbjct: 538 P 538
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying
defective protein 27,isoform a protein.
Length = 1129
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -1
Query: 201 PSCLLERCYS*HSASA*RKLRPSQPDRPRQWSPCSKFRPPSRARAGTASSGTPSCGSVSV 22
P+CL +R S S R + R R +P S P R T S+G P+ +
Sbjct: 483 PACLFKRSNSDEEESGVRTRAGKKEQRRR--TPSSMSETPDRRSPSTVSNGAPNLTAEET 540
Query: 21 P 19
P
Sbjct: 541 P 541
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -1
Query: 201 PSCLLERCYS*HSASA*RKLRPSQPDRPRQWSPCSKFRPPSRARAGTASSGTPSCGSVSV 22
P+CL +R S S R + R R +P S P R T S+G P+ +
Sbjct: 483 PACLFKRSNSDEEESGVRTRAGKKEQRRR--TPSSMSETPDRRSPSTVSNGAPNLTAEET 540
Query: 21 P 19
P
Sbjct: 541 P 541
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 176 IRNILRQHRESCGHPNLTDP 117
+ NI+ Q R+ C HPNL +P
Sbjct: 830 VLNIVMQLRKCCNHPNLFEP 849
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 176 IRNILRQHRESCGHPNLTDP 117
+ NI+ Q R+ C HPNL +P
Sbjct: 830 VLNIVMQLRKCCNHPNLFEP 849
>AC006829-1|AAF60923.1| 258|Caenorhabditis elegans Hypothetical
protein Y9C12A.1 protein.
Length = 258
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 471 YVRISTGLLAITNIVSGLYFISCGIICL 388
YVR+ G+ + N ++ LYF+ G ICL
Sbjct: 86 YVRLPRGMF-VWNTLNSLYFLLIGTICL 112
>Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical
protein F15A2.1 protein.
Length = 291
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = +2
Query: 5 RDQSHGTLTEPQDGVPEEAVPARAREGGRNLEQGDHCRGRSGWDGRSFLY---ADAEC 169
RD S G P+ AR +G L G+ G DG+S Y A+A+C
Sbjct: 86 RDNSQCHCGLQSQGCPDGPPGARGPQGAPGLPGAPGVDGKPGVDGKSLTYVHAAEADC 143
>U41558-2|AAK39245.2| 457|Caenorhabditis elegans Hypothetical
protein K02B2.1 protein.
Length = 457
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +3
Query: 36 HKMESLKKLFQPVHEKVDETWSKVTIVGVGQ 128
+++E+ KK ++P+ E DE+ S + ++ G+
Sbjct: 189 NRIENYKKQYEPLDESEDESLSFIKVINAGR 219
>AF026215-1|AAB71319.1| 352|Caenorhabditis elegans Serpentine
receptor, class h protein83 protein.
Length = 352
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -1
Query: 480 HVTYVRISTGLLAITNIVSGLYFISCGIICLRTSV 376
+VT++ + TG+ +T I ++F++C + L SV
Sbjct: 200 YVTFLALFTGIGVLTEIAQIVFFLACCVYYLFVSV 234
>Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical
protein F59F5.6 protein.
Length = 1139
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 305 KICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQ 406
K+ + AG+R +E E D+++R +V Q +PQ
Sbjct: 58 KVQLENAGLRTKEVEKERDMMKRQFEVHTQNLPQ 91
>U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domain
protein protein 1 protein.
Length = 709
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 464 EYPRGYWRSPILCPDCTLSAAGLFV*EH 381
E+ GY +PI CP + GL+V H
Sbjct: 68 EFTSGYVTTPICCPSRSTILTGLYVHNH 95
>AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha
homolog SYD-2 protein.
Length = 1139
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 305 KICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQ 406
K+ + AG+R +E E D+++R +V Q +PQ
Sbjct: 58 KVQLENAGLRTKEVEKERDMMKRQFEVHTQNLPQ 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,998,861
Number of Sequences: 27780
Number of extensions: 272978
Number of successful extensions: 871
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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