Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1863
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   1.8  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    27   3.1  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    26   5.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   5.3  
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    25   7.1  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   9.3  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   9.3  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 369  KSLMQLKNLMQLKSLIQLKFRL--HINVGGDVQNSHGVHHHLID 244
            +S+  +  L+ L+ L    FR+   IN G D +N   VH H+++
Sbjct: 960  RSVSTIMYLLSLQGLAIAPFRIVDEINQGMDPRNERVVHRHIVN 1003


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 258 HHLIDQRIIFEE*LNVPIPSIAVFNTSYFIHTSSWITI 145
           ++L D+ + FE+ +N P+P +   N SY  H   W+ I
Sbjct: 99  YYLDDEEVDFEKIINAPLPKVP-RNISYSAH---WLAI 132


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 481 TNETPMSCSKDDGVP 437
           TNE P +CS+ DG+P
Sbjct: 93  TNEKPFTCSEIDGLP 107


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 351  LIALDFLIALNYYRNSRLCVKWFAIYITKGT 443
            L +L  L+ ++YY   R+ ++W +I+   GT
Sbjct: 1191 LFSLQKLVEISYYNMRRIRMEWSSIWSLLGT 1221


>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 323 IRLFNCIRFFNCIRLFNCIKLLQELKALC 409
           I L+N ++F + +R+F  + +L +   LC
Sbjct: 107 ILLWNQLKFMSLVRMFTTLAVLAQCNLLC 135


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
 Frame = +1

Query: 187 ENCNTRNRYIELFFK-----YYSLINQMMVNSM 270
           ++CN +N+   LFF+      + +I+Q+M N+M
Sbjct: 559 KSCNEKNQLFSLFFRKDTPNIFLIISQLMENTM 591


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 351  LIALDFLIALNYYRNSRLCVKWFAIYITKG 440
            L +L  L+ ++YY   R+ V+W +I+   G
Sbjct: 1191 LYSLQKLVEISYYNMQRIRVEWSSIWNVLG 1220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,276
Number of Sequences: 5004
Number of extensions: 54116
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)