Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1863
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0790 + 28083116-28083337,28083446-28083652,28083739-280838...    27   9.7  
03_01_0115 - 915142-915321,915397-915631,916301-916386,916474-91...    27   9.7  
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820...    27   9.7  
02_01_0244 + 1603381-1603792,1604054-1604132,1604993-1605862,160...    27   9.7  

>04_04_0790 +
           28083116-28083337,28083446-28083652,28083739-28083809,
           28083898-28084063,28084189-28084788,28084928-28085323
          Length = 553

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 345 DFLIALDFLIALNYYRNSRLCVK 413
           DF+ A +FL++  Y   SRLCV+
Sbjct: 512 DFIAAGEFLVSAGYTNPSRLCVE 534


>03_01_0115 -
           915142-915321,915397-915631,916301-916386,916474-916590,
           917271-917591,918386-918772
          Length = 441

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 350 FNCIRLFNCIKLLQELKALC*VVCHLHHKGNAVVLGTRHGSLISNTILLLS 502
           F   R  +C++ L++LK    +  HLH     + +  RH ++I  T+  +S
Sbjct: 301 FYSSRYGSCLEHLEKLKTNLLLDIHLHDHVETLYMDIRHKAIIQYTLPFIS 351


>02_05_0300 +
           27681204-27681656,27681745-27681840,27681933-27682022,
           27682126-27682227,27682310-27682456,27683608-27683748,
           27683749-27683808,27685133-27685230,27685308-27685410,
           27685954-27686037
          Length = 457

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 284 SPPTLMCSRNFNWIRLFNCIRFFNCIRLFNCIKLLQELKAL 406
           S P L+CS N N +RL++   F +  R+F+     QE++A+
Sbjct: 376 SKPVLLCSLNDNTVRLYDLPSFSDRGRIFS----KQEIRAI 412


>02_01_0244 +
           1603381-1603792,1604054-1604132,1604993-1605862,
           1606019-1606276,1606675-1606834
          Length = 592

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 412 SGLPFTSQRERRRPWNTTWES 474
           +G+     R RRR W  TWES
Sbjct: 9   AGVAVAGDRARRRQWRYTWES 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,624,244
Number of Sequences: 37544
Number of extensions: 319340
Number of successful extensions: 690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)