Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1863
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68295-1|CAA92587.1|  325|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U23139-3|AAK31486.2|  275|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U13019-10|AAC24442.1|  757|Caenorhabditis elegans Hypothetical p...    28   4.9  
AL021492-10|CAJ76948.1|  167|Caenorhabditis elegans Hypothetical...    28   6.5  
AL021492-9|CAA16386.1|  407|Caenorhabditis elegans Hypothetical ...    28   6.5  

>Z68295-1|CAA92587.1|  325|Caenorhabditis elegans Hypothetical
           protein C07C7.1 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -1

Query: 219 LNVPIPSIAVFNTSYFIHTSSWITINNFFLATLSNNHCITV*IKIM-YLVVLVVGHL 52
           L++ IP   +F    FI ++ WI + + FL T  NN  +    KI  ++V+L++ HL
Sbjct: 46  LHLHIPPATIFLNVSFI-SNFWIHLCSPFLPTQKNNKILNSESKIFAFVVLLLLPHL 101


>U23139-3|AAK31486.2|  275|Caenorhabditis elegans Hypothetical
           protein F13H8.4 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 300 CVVEILIGLDFLIALDFLIALDFLIALNYYRNSRLCV 410
           CV+ +LI    +IA  F+I++   + + YY   RLC+
Sbjct: 75  CVIAMLIDFFLIIAWLFIISIVSWLCIFYYFFDRLCM 111


>U13019-10|AAC24442.1|  757|Caenorhabditis elegans Hypothetical
           protein T12A2.2 protein.
          Length = 757

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +2

Query: 8   G*NRQGGGT*SRGLTRCPTTSTTRYIILIYTVMQWLLERVARKKL 142
           G N+ GG   +RG        T  YI   YT   WL+    RKKL
Sbjct: 674 GYNQAGGFDRTRGYVIGKKDITLEYIEEAYTTENWLVRIYKRKKL 718


>AL021492-10|CAJ76948.1|  167|Caenorhabditis elegans Hypothetical
           protein Y45F10D.11b protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -1

Query: 192 VFNTSYFIHTSSWITINNFFLATLSNNHCITV*IKIMYLVVLVVG 58
           + N+S+F HT + +  ++  L   S+  C+ +   +    VL +G
Sbjct: 112 ISNSSFFYHTGAAVGASSVLLVNTSSGVCVAILCNLQNTTVLKLG 156


>AL021492-9|CAA16386.1|  407|Caenorhabditis elegans Hypothetical
           protein Y45F10D.11a protein.
          Length = 407

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -1

Query: 192 VFNTSYFIHTSSWITINNFFLATLSNNHCITV*IKIMYLVVLVVG 58
           + N+S+F HT + +  ++  L   S+  C+ +   +    VL +G
Sbjct: 352 ISNSSFFYHTGAAVGASSVLLVNTSSGVCVAILCNLQNTTVLKLG 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,529,082
Number of Sequences: 27780
Number of extensions: 293076
Number of successful extensions: 669
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)