Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1861
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1066 + 30098780-30098866,30099139-30099225,30099318-300994... 83 2e-16
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631... 82 4e-16
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594... 71 8e-13
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087... 67 1e-11
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 53 2e-07
11_03_0028 - 9080650-9080667,9080701-9080794,9082099-9082185,908... 29 2.3
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736... 28 7.1
01_06_0654 + 30911416-30912071,30913664-30914348 28 7.1
>03_05_1066 +
30098780-30098866,30099139-30099225,30099318-30099439,
30099580-30099656,30100135-30100259,30100497-30100589,
30100840-30100932,30101016-30101213,30101337-30101441,
30101535-30101600,30101808-30101885,30102144-30102233,
30102325-30102448,30102590-30102741
Length = 498
Score = 83.0 bits (196), Expect = 2e-16
Identities = 41/69 (59%), Positives = 48/69 (69%)
Frame = +3
Query: 306 MSAKLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASDNFTSVPVLQCLSSCLHNKYSEG 485
M K LN+ L E DPE+ DII EK RQ GLE+I S+NFTSV V+Q + S + NKYSEG
Sbjct: 29 MWPKQLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEG 88
Query: 486 MPNQRYYGG 512
P RYYGG
Sbjct: 89 YPGARYYGG 97
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1
Query: 532 EILAQNRSLEAYRLKSEEWGVNVQPYSGSPANF 630
E L Q R+LEA+RL +WGVNVQP SGSPANF
Sbjct: 105 ESLCQKRALEAFRLDPAKWGVNVQPLSGSPANF 137
>11_04_0205 +
14860857-14861534,14862585-14862975,14863069-14863170,
14863438-14863682
Length = 471
Score = 81.8 bits (193), Expect = 4e-16
Identities = 35/61 (57%), Positives = 48/61 (78%)
Frame = +3
Query: 342 ADPELFDIIVKEKDRQRAGLEMIASDNFTSVPVLQCLSSCLHNKYSEGMPNQRYYGGMNI 521
ADP + D++ +EK RQR+G+E+IAS+NFTS V++ L S L NKYSEGMP RYYGG ++
Sbjct: 15 ADPLVHDLLEREKRRQRSGIELIASENFTSFAVMEALGSALTNKYSEGMPGARYYGGNDV 74
Query: 522 L 524
+
Sbjct: 75 I 75
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 529 IEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFA 633
IE L ++R+L A+RL + WGVNVQPYSGSPA FA
Sbjct: 78 IENLCRDRALAAFRLDAASWGVNVQPYSGSPATFA 112
>01_06_1521 +
37956131-37957204,37958560-37958962,37959370-37959471,
37959569-37959792
Length = 600
Score = 70.9 bits (166), Expect = 8e-13
Identities = 34/63 (53%), Positives = 43/63 (68%)
Frame = +3
Query: 324 NSNLWEADPELFDIIVKEKDRQRAGLEMIASDNFTSVPVLQCLSSCLHNKYSEGMPNQRY 503
N L EADP++ ++ E+DRQ G+E+IAS+NF VL+ L S L NKYSEG P RY
Sbjct: 141 NQALAEADPDVHALMELERDRQVRGIELIASENFVCRAVLEALGSHLTNKYSEGHPGARY 200
Query: 504 YGG 512
YGG
Sbjct: 201 YGG 203
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/35 (54%), Positives = 22/35 (62%)
Frame = +1
Query: 529 IEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFA 633
IE L R+L A+ L WGVNVQPYS + AN A
Sbjct: 210 IERLCHERALAAFGLDPACWGVNVQPYSCTSANLA 244
>05_04_0394 -
20906923-20907146,20907251-20907340,20908380-20908785,
20909264-20910247
Length = 567
Score = 66.9 bits (156), Expect = 1e-11
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Frame = +3
Query: 276 AAKRYISSTKMSAKLLNSNLW------EADPELFDIIVKEKDRQRAGLEMIASDNFTSVP 437
AAKR ++ + A+ W EADP++ +++ +E+ RQ G+E+IAS+N+
Sbjct: 89 AAKRRAAAGGLEARRAAVRAWGCQPLTEADPDVHELMERERRRQAGGVELIASENYACRA 148
Query: 438 VLQCLSSCLHNKYSEGMPNQRYYGG 512
VL L S L NKYSEG+P RYY G
Sbjct: 149 VLDALGSHLTNKYSEGLPGARYYCG 173
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +1
Query: 529 IEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFA 633
IE L +R+L A+ L WGVNVQPYS + ANFA
Sbjct: 180 IERLCCDRALAAFGLDPSRWGVNVQPYSCTSANFA 214
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +1
Query: 529 IEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFA 633
+E L + R+L A+ L E WGVNVQPYSGSPANFA
Sbjct: 31 VEELCRARALAAFHLDPEAWGVNVQPYSGSPANFA 65
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 441 LQCLSSCLHNKYSEGMPNQRYYGGMNIL 524
++ L S L NKYSEGMP RYYGG ++
Sbjct: 1 MEALGSPLTNKYSEGMPGSRYYGGNEVI 28
>11_03_0028 -
9080650-9080667,9080701-9080794,9082099-9082185,
9082276-9082333,9083535-9083598,9083837-9083898,
9083976-9084027,9084410-9084530,9085369-9085463
Length = 216
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 534 DTGTEQVSGSIQIKIGRMGRQCTAIFRFSGELC 632
D+G+ I I IGR G C+++ R G+ C
Sbjct: 135 DSGSGPRLDGINISIGRRGESCSSVCRAKGQSC 167
>08_02_1458 -
27270834-27271320,27271752-27271961,27272627-27273624,
27274099-27274195,27274278-27274393,27274465-27274590,
27275123-27275233,27275347-27275428,27275844-27275989,
27276457-27276650,27277277-27277388,27277869-27278001,
27278295-27278437,27278488-27278562,27278830-27278937,
27279072-27279197,27279752-27279836,27280358-27280440,
27280545-27280625,27280709-27280789,27281960-27282034,
27282112-27282498,27282902-27283036
Length = 1396
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 599 TLTPHSSDFNLYASRDLFCASISIHQY 519
TL PH + L+A DLFC+ + ++ +
Sbjct: 224 TLLPHQNSLILHAFMDLFCSFVRVNLF 250
>01_06_0654 + 30911416-30912071,30913664-30914348
Length = 446
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 526 WIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFA 633
W+ L +R +A R + + W V + SGSP A
Sbjct: 238 WLSTLHGDRDAQARREQRKGWTVTIHDLSGSPVAMA 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,625,355
Number of Sequences: 37544
Number of extensions: 280685
Number of successful extensions: 526
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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