Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1861
         (633 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ618917-1|CAF01996.1|  199|Anopheles gambiae putative odorant-b...    28   0.28 
U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.             24   3.5  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   6.1  

>AJ618917-1|CAF01996.1|  199|Anopheles gambiae putative
           odorant-binding protein OBPjj1 protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 0.28
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 348 PELFDIIVKEKDRQRAGLEMIASDN-FTSVPVLQCLSSCLHNKYSEGMPNQR 500
           P+L D+ +     ++  ++  A+D    S+P  +C+S C+ N  S G+ N+R
Sbjct: 41  PKLLDVTIVSSCFEKFPIDKDAADKGAASMPKTECMSECILN--STGIYNRR 90


>U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.
          Length = 278

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 546 LCQYLYPSIYSFPH 505
           LCQY  P + SFPH
Sbjct: 257 LCQYDSPILLSFPH 270


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/47 (19%), Positives = 23/47 (48%)
 Frame = +3

Query: 435  PVLQCLSSCLHNKYSEGMPNQRYYGGMNILMDRDTGTEQVSGSIQIK 575
            P +Q +  C++ K+S  M +  + G + ++   +   ++    I +K
Sbjct: 877  PEIQSVVQCINGKFSHFMSSMGFAGEVELIRQGERDYDEYGIRIYVK 923


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,911
Number of Sequences: 2352
Number of extensions: 13222
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61886940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)