Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1861
         (633 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011432-1|AAR99090.1|  537|Drosophila melanogaster RH67089p pro...    99   4e-21
AE014298-819|AAF46101.1|  537|Drosophila melanogaster CG3011-PA ...    99   4e-21

>BT011432-1|AAR99090.1|  537|Drosophila melanogaster RH67089p
           protein.
          Length = 537

 Score = 99.1 bits (236), Expect = 4e-21
 Identities = 49/73 (67%), Positives = 58/73 (79%)
 Frame = +3

Query: 315 KLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASDNFTSVPVLQCLSSCLHNKYSEGMPN 494
           KLL + L + DPEL ++I KEK+RQR GLEMIAS+NFTSV VL+ LSSCL NKYSEG P 
Sbjct: 75  KLLQTPLAQGDPELAELIKKEKERQREGLEMIASENFTSVAVLESLSSCLTNKYSEGYPG 134

Query: 495 QRYYGGMNILMDR 533
           +RYYGG N  +DR
Sbjct: 135 KRYYGG-NEYIDR 146



 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 24/35 (68%), Positives = 27/35 (77%)
 Frame = +1

Query: 529 IEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFA 633
           IE+LAQ R  E + L  E+WGVNVQPYSGSPAN A
Sbjct: 147 IELLAQQRGRELFNLDDEKWGVNVQPYSGSPANLA 181


>AE014298-819|AAF46101.1|  537|Drosophila melanogaster CG3011-PA
           protein.
          Length = 537

 Score = 99.1 bits (236), Expect = 4e-21
 Identities = 49/73 (67%), Positives = 58/73 (79%)
 Frame = +3

Query: 315 KLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASDNFTSVPVLQCLSSCLHNKYSEGMPN 494
           KLL + L + DPEL ++I KEK+RQR GLEMIAS+NFTSV VL+ LSSCL NKYSEG P 
Sbjct: 75  KLLQTPLAQGDPELAELIKKEKERQREGLEMIASENFTSVAVLESLSSCLTNKYSEGYPG 134

Query: 495 QRYYGGMNILMDR 533
           +RYYGG N  +DR
Sbjct: 135 KRYYGG-NEYIDR 146



 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 24/35 (68%), Positives = 27/35 (77%)
 Frame = +1

Query: 529 IEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFA 633
           IE+LAQ R  E + L  E+WGVNVQPYSGSPAN A
Sbjct: 147 IELLAQQRGRELFNLDDEKWGVNVQPYSGSPANLA 181


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,321,843
Number of Sequences: 53049
Number of extensions: 492801
Number of successful extensions: 802
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)