Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1861
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effec...    81   6e-16
U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effec...    81   6e-16
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ...    29   2.1  
U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform a protein.
          Length = 484

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 37/65 (56%), Positives = 47/65 (72%)
 Frame = +3

Query: 318 LLNSNLWEADPELFDIIVKEKDRQRAGLEMIASDNFTSVPVLQCLSSCLHNKYSEGMPNQ 497
           +L  ++ + DPE+FDI+  EK RQR GLE+IAS+NFTS  V+  L S + NKYSEG P  
Sbjct: 24  ILVDHVEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGA 83

Query: 498 RYYGG 512
           RYYGG
Sbjct: 84  RYYGG 88



 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 22/35 (62%), Positives = 27/35 (77%)
 Frame = +1

Query: 529 IEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFA 633
           +E+L Q R+LE + L   +WGVNVQP SGSPANFA
Sbjct: 95  MELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFA 129


>U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform b protein.
          Length = 507

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 37/65 (56%), Positives = 47/65 (72%)
 Frame = +3

Query: 318 LLNSNLWEADPELFDIIVKEKDRQRAGLEMIASDNFTSVPVLQCLSSCLHNKYSEGMPNQ 497
           +L  ++ + DPE+FDI+  EK RQR GLE+IAS+NFTS  V+  L S + NKYSEG P  
Sbjct: 47  ILVDHVEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGA 106

Query: 498 RYYGG 512
           RYYGG
Sbjct: 107 RYYGG 111



 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 22/35 (62%), Positives = 27/35 (77%)
 Frame = +1

Query: 529 IEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFA 633
           +E+L Q R+LE + L   +WGVNVQP SGSPANFA
Sbjct: 118 MELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFA 152


>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
            protein Y46G5A.4 protein.
          Length = 2145

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 351  ELFDIIVKEKDRQRAGLEMI-ASDNFTSVPVLQCLSSCLHNKYSEGMPNQ 497
            ELF + +KEK + RA +E+I AS  F +VP ++     +  + +E +P Q
Sbjct: 1829 ELFSMSLKEKTKTRALIEIISASSEFGNVP-MRHKEDVILRQLAERLPGQ 1877


>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 183 HVFLQS*ETAYRREQSTARDCVI 251
           HVFL+  E A+++EQ+  +DC I
Sbjct: 528 HVFLEEQEPAHQKEQNKEQDCPI 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,542,718
Number of Sequences: 27780
Number of extensions: 274331
Number of successful extensions: 586
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)