Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1860
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    28   1.3  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   2.3  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   5.4  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    25   9.4  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   9.4  

>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = +1

Query: 535 KTVRGQHN*YSLSTYKH*IVFSQCIPKTN*YNVKHILIYKSHIFFVRKMFCSHILLY 705
           + V  Q+N Y  +++ H + +S+C    N +   H+  Y+  + F+  + C  ++LY
Sbjct: 354 EAVLTQNNDYDFNSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAV-CEAMMLY 409


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 637  HILIYKSHIFFVRKMFCSHILLYLTIGITFYD 732
            H+L + S   +++  FCS   L+ TI +  YD
Sbjct: 1199 HMLNFISSTLYLKVSFCSSNFLFKTISVLVYD 1230


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 66  SVLWAELSNLKHSRPHTKNSSKSLQPLRRSS 158
           SV  + LSN+  S PH   S  ++ P+R SS
Sbjct: 480 SVSLSSLSNVNSSMPHKPASQSNVGPVRISS 510


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 442 RNVNHQEKLISNTSSHYQPQ 501
           +N+NH EK++S + S+Y  Q
Sbjct: 521 QNLNHYEKILSRSHSNYLAQ 540


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 555 MLSPDSFANIYWTSRRYGLR 496
           +L PDS + +YW+ +  G+R
Sbjct: 749 ILDPDSLSGLYWSVKSAGVR 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,200,330
Number of Sequences: 5004
Number of extensions: 65176
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)