Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1860
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   7.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   10.0 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   10.0 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   10.0 

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 217 ENESGTIDNSDVFFDPSQSKFSLNNIN 297
           +N+S  I ++  +FDP    +++N  N
Sbjct: 206 KNDSWRITHNFFYFDPRYGNYNINGFN 232


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 133 PSNRFGGVR*HTYGQDNYIIYFI 201
           P+N  G    H Y  +N +IYFI
Sbjct: 202 PANYSGWYLNHDYNLENKLIYFI 224


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 391 VTTYDVTPYAHLTQSKGRNVNHQEKLISNTSSHYQ 495
           V TYD TP         R    Q  LISN +  +Q
Sbjct: 325 VATYDNTPRDFPYYMYSREQYSQSHLISNENRDFQ 359


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 663 YMRLIYKNMFYIILIGFWYTL 601
           Y+ L+Y+++  +I IGF + +
Sbjct: 50  YLHLLYQDVHVMIWIGFGFLM 70


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 97  FKLDNSAHKTLYLFCC 50
           +K+D    K L+LF C
Sbjct: 291 YKIDQRIQKGLFLFAC 306


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 689 EQNILRTKNICD 654
           E  IL+TKN CD
Sbjct: 163 EMRILKTKNECD 174


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 689 EQNILRTKNICD 654
           E  IL+TKN CD
Sbjct: 163 EMRILKTKNECD 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,970
Number of Sequences: 438
Number of extensions: 4514
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)