Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1859X
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1399 + 29892993-29893154,29894819-29895132,29895227-298953... 31 0.48
05_06_0196 + 26293889-26294122,26294317-26294375,26294454-262945... 31 0.64
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 31 0.64
05_04_0398 - 20946852-20947214 29 2.6
07_01_0881 - 7305441-7305581,7305671-7305901,7306539-7306772 29 3.4
06_02_0074 - 11461300-11461681,11461744-11462009 28 4.5
02_05_1003 + 33430757-33431674,33431774-33431926,33432476-33432772 28 4.5
09_03_0207 - 13486694-13487047 28 6.0
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 27 7.9
>06_03_1399 +
29892993-29893154,29894819-29895132,29895227-29895319,
29895424-29895514,29895791-29895884,29896161-29896255,
29896432-29896501,29896612-29896691,29897145-29897261,
29897566-29897642,29897907-29898432
Length = 572
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 42 LYTSNSSEVMYLTFDDXGDVDDLANVXMARLNSSAVYLEWHKIRGVEGYLVQVRLPMDYA 221
L +SNSSE++Y+ + D D D+ + + R + WH + L P D++
Sbjct: 142 LVSSNSSELLYIAYVDKRDELDIFSREVIRFGNLCKDPTWHNLGRYFNKLTTDFAPQDHS 201
Query: 222 K 224
K
Sbjct: 202 K 202
>05_06_0196 +
26293889-26294122,26294317-26294375,26294454-26294554,
26294638-26294717,26294856-26294906,26295225-26295299,
26295386-26295463,26295700-26295756,26296226-26296296,
26296395-26296494,26296574-26296678,26296763-26296825,
26296940-26297062,26297129-26297193,26297352-26297358
Length = 422
Score = 31.1 bits (67), Expect = 0.64
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = +2
Query: 143 RRVPRVAQDPRGRGLPRAGPAAHGLRET*PGQDTNE*LTITDLPPGVVLNIDIQAYKASI 322
R AQ R P GL E GQD + + T L GVVL + + + I
Sbjct: 32 RSYSSTAQSSSPRRFPTPKEIRRGLDEFVVGQDKAKKVNETSLLVGVVLCVAVHNHYKRI 91
Query: 323 YGEPFTLSVKNRSEPDETLN 382
Y E S+K+ + D +++
Sbjct: 92 YSESSNCSMKSSACGDVSMS 111
>03_05_0776 + 27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 31.1 bits (67), Expect = 0.64
Identities = 24/71 (33%), Positives = 32/71 (45%)
Frame = +2
Query: 215 LRET*PGQDTNE*LTITDLPPGVVLNIDIQAYKASIYGEPFTLSVKNRSEPDETLNLTAM 394
LR P DTNE L G + IQ Y++ + T S+K +E DET A
Sbjct: 947 LRSLKPPSDTNERRPAFALCRGQEITATIQCYQSLVVSLSSTSSLKILTENDETPPDCAT 1006
Query: 395 LLKEKRTSVHL 427
+ K SV+L
Sbjct: 1007 AVVNKDLSVYL 1017
>05_04_0398 - 20946852-20947214
Length = 120
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Frame = +1
Query: 175 GSRATSCRSGCPWTTRNVTRSRYK---RITYDNGSTTG-RRSEHRHTSLQSVDIRRTIHA 342
GS R+G R+ TR R++ R+ + TG RR + L ++I +
Sbjct: 24 GSGELQKRAGVVGRRRHETRRRWRETRRVVHGGWVLTGMRRKQRPPAQLAGMEIGTACSS 83
Query: 343 VR*KPKRTRRDAEPDRNAAKGKTHLRTSG 429
R TRR P R A H + G
Sbjct: 84 RRWPQLLTRRPQPPSRPPAASSVHRESKG 112
>07_01_0881 - 7305441-7305581,7305671-7305901,7306539-7306772
Length = 201
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/83 (24%), Positives = 43/83 (51%)
Frame = +2
Query: 257 TITDLPPGVVLNIDIQAYKASIYGEPFTLSVKNRSEPDETLNLTAMLLKEKRTSVHLAWD 436
T+TD VVLN+ K +++ SV++R + + + ++EK S+H W+
Sbjct: 39 TVTDANDNVVLNV-----KGTLF------SVRHRRVLHDAVGQPLLSMQEKILSMHNRWE 87
Query: 437 PPKGERYKNKELLYEVHYSNVIR 505
+G+ + + L+ V S++++
Sbjct: 88 VYRGDSAHSCDKLFTVKKSSMLQ 110
>06_02_0074 - 11461300-11461681,11461744-11462009
Length = 215
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +1
Query: 175 GSRATSCRSGCPWTTRNVTRSRYKRITYDNGSTTG-RRSE 291
G R CR C W R VT YK T G T G +R E
Sbjct: 121 GWRRRGCRRRCRWGRRTVTEKAYKVAT--AGDTEGDKRGE 158
>02_05_1003 + 33430757-33431674,33431774-33431926,33432476-33432772
Length = 455
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 148 CTSSGTRSAGSRATSCRSGCPWTTRNVTRSRYKRIT 255
CT T + G R S GCP +TR R + +T
Sbjct: 144 CTGRDTLANGRRLASLVGGCPRAFAGLTRLRVESVT 179
>09_03_0207 - 13486694-13487047
Length = 117
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 204 AGPARGSPRPRGSCATRGTRRWS*G 130
AG A S G C +RG RRWS G
Sbjct: 12 AGAAMQSGSRGGGCRSRGRRRWSPG 36
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 397 QHCGQVQRLVWFASVFNGQREWFAVYRRFV 308
+HCG+ +RL W + EW A R V
Sbjct: 213 EHCGERERLSWTLLMLAAHPEWQAAVREEV 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,254,589
Number of Sequences: 37544
Number of extensions: 324466
Number of successful extensions: 1025
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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