Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1859X
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 31 0.44
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 31 0.44
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 31 0.44
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 31 0.44
AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ... 29 1.8
U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily ass... 29 3.1
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 27 7.1
U97189-7|AAK68257.3| 782|Caenorhabditis elegans Hypothetical pr... 27 7.1
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 27 7.1
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 27 7.1
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z50176-4|CAA90541.1| 546|Caenorhabditis elegans Hypothetical pr... 27 9.4
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 27 9.4
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 27 9.4
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 31.5 bits (68), Expect = 0.44
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +2
Query: 260 ITDLPPGVVLNIDIQAYKASIYGEPFTLSVKNR---SEPDETLNLTAMLLKEKRTSVHLA 430
I L PG + I ++AY A G P++ S++ R SE LTA+ + K T + L
Sbjct: 3205 IDQLQPGSLYRIKVRAYTAEGPG-PWSDSLEIRTTGSELGPPRELTAV--QTKATQIQLT 3261
Query: 431 WDPPKGERYKNKELLYEVHYS 493
W PP E K Y + YS
Sbjct: 3262 WLPPYPE--KAIVTAYRIRYS 3280
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 31.5 bits (68), Expect = 0.44
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +2
Query: 260 ITDLPPGVVLNIDIQAYKASIYGEPFTLSVKNR---SEPDETLNLTAMLLKEKRTSVHLA 430
I L PG + I ++AY A G P++ S++ R SE LTA+ + K T + L
Sbjct: 3205 IDQLQPGSLYRIKVRAYTAEGPG-PWSDSLEIRTTGSELGPPRELTAV--QTKATQIQLT 3261
Query: 431 WDPPKGERYKNKELLYEVHYS 493
W PP E K Y + YS
Sbjct: 3262 WLPPYPE--KAIVTAYRIRYS 3280
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 31.5 bits (68), Expect = 0.44
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +2
Query: 260 ITDLPPGVVLNIDIQAYKASIYGEPFTLSVKNR---SEPDETLNLTAMLLKEKRTSVHLA 430
I L PG + I ++AY A G P++ S++ R SE LTA+ + K T + L
Sbjct: 3205 IDQLQPGSLYRIKVRAYTAEGPG-PWSDSLEIRTTGSELGPPRELTAV--QTKATQIQLT 3261
Query: 431 WDPPKGERYKNKELLYEVHYS 493
W PP E K Y + YS
Sbjct: 3262 WLPPYPE--KAIVTAYRIRYS 3280
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 31.5 bits (68), Expect = 0.44
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +2
Query: 260 ITDLPPGVVLNIDIQAYKASIYGEPFTLSVKNR---SEPDETLNLTAMLLKEKRTSVHLA 430
I L PG + I ++AY A G P++ S++ R SE LTA+ + K T + L
Sbjct: 3205 IDQLQPGSLYRIKVRAYTAEGPG-PWSDSLEIRTTGSELGPPRELTAV--QTKATQIQLT 3261
Query: 431 WDPPKGERYKNKELLYEVHYS 493
W PP E K Y + YS
Sbjct: 3262 WLPPYPE--KAIVTAYRIRYS 3280
>AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical
protein Y66H1B.3 protein.
Length = 1084
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 188 PRAGPAAHGLRET*PGQDTNE*LTITDLPPGVVLNIDIQAYKASIYGEPFTLSVKNRSE 364
P P ++G RE PG E I D P + ID+ S+ G PF++ VK ++
Sbjct: 683 PELNPISYGAREITPG--LFEYTLIPDAP--IKHKIDVSVAGVSVPGAPFSVKVKEPTD 737
>U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily
assigned gene nameprotein 130 protein.
Length = 756
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 42 LYTSNSSEVMYLTFDDXGDVDDLA 113
L T+++SE +YL +D GDVD +A
Sbjct: 145 LVTASASEPVYLRYDIPGDVDSVA 168
>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical
protein T05H10.1 protein.
Length = 1326
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +2
Query: 236 QDTNE*LTITDLPPGVVLNIDIQAYKASIYGEPFTLSVKNRSEPDETLNLTAMLLKEKRT 415
QD ++ L IT P +L I ++ + Y + + ++ + L+L + KEKR+
Sbjct: 278 QDAHKGLRITQFP--YLLTIQLKRFDFD-YNTMHRIKLNDKMTFPDVLDLNDYVNKEKRS 334
Query: 416 SVHLAWDPPKGERYKNKE 469
+ AW + +N+E
Sbjct: 335 TTSSAWQQIGKNKSENEE 352
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +1
Query: 220 RNVTRSRYKRITYDNGSTTGRRSEHRHTSLQSVDIRRTIHAVR*KPKRTRRDAEPDRN 393
R +RSRY YD+ + R E R + + + + + R RD E DRN
Sbjct: 377 RQRSRSRYDDSVYDSEADRERERERRRSKRNRQGGSQRSSSKKHRDDRRDRDRERDRN 434
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +1
Query: 220 RNVTRSRYKRITYDNGSTTGRRSEHRHTSLQSVDIRRTIHAVR*KPKRTRRDAEPDRN 393
R +RSRY YD+ + R E R + + + + + R RD E DRN
Sbjct: 377 RQRSRSRYDDSVYDSEADRERERERRRSKRNRQGGSQRSSSKKHRDDRRDRDRERDRN 434
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +1
Query: 220 RNVTRSRYKRITYDNGSTTGRRSEHRHTSLQSVDIRRTIHAVR*KPKRTRRDAEPDRN 393
R +RSRY YD+ + R E R + + + + + R RD E DRN
Sbjct: 371 RQRSRSRYDDSVYDSEADRERERERRRSKRNRQGGSQRSSSKKHRDDRRDRDRERDRN 428
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 219 RSPWAAGPARGSPRPRGSCATRGTR 145
R+P ++G + P PRGS A GTR
Sbjct: 283 RTPPSSGTSAPQPPPRGSTAAPGTR 307
>U97189-7|AAK68257.3| 782|Caenorhabditis elegans Hypothetical
protein C48B6.8 protein.
Length = 782
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 308 YKASIYGEPFTLSVKNRSEPDETL 379
Y A IY + + + NRS PDETL
Sbjct: 102 YSAVIYHTEWLIIMTNRSSPDETL 125
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 386 TAMLLKEKRTSVHLAWDPPKGERYKNKE 469
T +L EK + +H++ D KG+R+K ++
Sbjct: 150 TCPILSEKWSGIHVSGDQLKGQRHKQED 177
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 386 TAMLLKEKRTSVHLAWDPPKGERYKNKE 469
T +L EK + +H++ D KG+R+K ++
Sbjct: 150 TCPILSEKWSGIHVSGDQLKGQRHKQED 177
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 431 WDPPKGERYKNKEL 472
W P KG RYKN EL
Sbjct: 58 WQPGKGARYKNTEL 71
>Z50176-4|CAA90541.1| 546|Caenorhabditis elegans Hypothetical
protein C09G1.4 protein.
Length = 546
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 179 RGLPRA--GPAAHGLRET*PGQDTNE*LTITDLPPGVVLN 292
+G PRA G G T GQ N I DLPPG N
Sbjct: 47 QGSPRAAAGFGGTGFNGTVNGQQVNSQRRIPDLPPGAYQN 86
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = +2
Query: 338 TLSVKNRSEPDETLNLTAMLLKEKRTSVHLAWDPPKGERYKNKELLYEVHYSNVIR 505
T+ V+ +S+ + + TSV ++WD P+ E + Y + Y R
Sbjct: 622 TVKVRTQSDEPSAPPVNIQAEADSSTSVRVSWDEPEEESVNGEITGYRLKYKTKAR 677
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = +2
Query: 338 TLSVKNRSEPDETLNLTAMLLKEKRTSVHLAWDPPKGERYKNKELLYEVHYSNVIR 505
T+ V+ +S+ + + TSV ++WD P+ E + Y + Y R
Sbjct: 622 TVKVRTQSDEPSAPPVNIQAEADSSTSVRVSWDEPEEESVNGEITGYRLKYKTKAR 677
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,677,554
Number of Sequences: 27780
Number of extensions: 276094
Number of successful extensions: 745
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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