Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1859X
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   3.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.7  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   8.6  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   8.6  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   8.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.6  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 546 NNLCIARHISWVYHLMTLL 490
           + + I  H  W+YH  TLL
Sbjct: 103 HEMSIPNHYLWLYHDKTLL 121


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 271 TTGRRSEHRHTSLQSVDIRRTIHAVR*KPKRTRRDAEP-DRNAAKG 405
           T  R     H  +++  IRRT+H  R   K ++  + P  R+  KG
Sbjct: 143 TKSRLMRCLHHDIENAHIRRTLHMNRTSLKTSKIVSYPKSRSRKKG 188


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 352 KPKRTRRDAEPD 387
           +P R RR+AEP+
Sbjct: 28  RPTRLRREAEPE 39


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = +1

Query: 142 APCTSSGTRSAGSRATSCRSGCPWTTRNVTRSRYKRITY 258
           APC   G R         R  CP  +   TR   K +++
Sbjct: 59  APCDPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSH 97


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = +1

Query: 142 APCTSSGTRSAGSRATSCRSGCPWTTRNVTRSRYKRITY 258
           APC   G R         R  CP  +   TR   K +++
Sbjct: 59  APCDPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSH 97


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -2

Query: 166 LCHSRYTALELRRAMXTLARSSTSPXSSNVRYITS 62
           + H RY    LR  +      +T P  + +RY  S
Sbjct: 804 IAHDRYLPNSLRILLKRFLDITTPPTPNLLRYFAS 838


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,798
Number of Sequences: 438
Number of extensions: 3404
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)