Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1858X
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    29   0.42 
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    28   0.74 
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    27   1.7  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    25   5.2  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   5.2  
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi...    25   5.2  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.1  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   9.1  

>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 240 LQAFRETMKLLWTGDLKMNTVHVRDVCRAIWTLGTSP 350
           L++F E  KL+W  D KM   HV +     W L   P
Sbjct: 519 LESFVEHNKLMWLKDRKMGDGHVYESSALTWPLLLGP 555


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 509 LHRHRRYVVLSQSRNSGSIVIMIDFEYIRDELGQCTLS-AVPFVNQVIDLLVGLRTGPES 333
           LH +  ++    SR      + +  ++I D      L+ AVPF N+ +DL++  RT P++
Sbjct: 35  LHENVSWISWFCSRPGREYFVEVKEDFIEDLFNLTGLNLAVPFYNEALDLILD-RTAPDT 93


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +3

Query: 336 LGTSPQANKQIYNLVDEGNSTQGTLAELVSDIFKINHDYYGTAISTLAKNDIASVAVEPT 515
           LG +PQ ++++ NL+++ +    +  + +SDI     +   T I T    +   VA    
Sbjct: 108 LGPTPQLSRRVLNLLEDMSPIADSHVDQISDIKHNTSEISSTMIPTTPSKNPEPVAQHTP 167

Query: 516 T 518
           T
Sbjct: 168 T 168


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 7/29 (24%), Positives = 20/29 (68%)
 Frame = +1

Query: 67  QKEDCSIDPWTIEGRMKSKVEQELKNMED 153
           +K+DC +DP+ I+    + ++Q++  +++
Sbjct: 199 EKKDCPMDPFIIDHSKSTFIDQQVLKLQE 227


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 440 DFEYIRDELGQCTLSAVPFVNQVIDLLVGLRTG 342
           +F   RD L  C L  VPF+      L  L+TG
Sbjct: 795 NFSNYRDCLENCVLPCVPFLGVYFTDLTFLKTG 827


>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
           Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 71  FWGLSLLHICPLEISTSLGTFIL 3
           FWGL    I  +++ST LGT +L
Sbjct: 163 FWGLERKPIKGIQLSTKLGTKLL 185


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 295 TRYMSATSVVPSGLSGPVLRPTSRSITWLTKGTALRVHWPSSSLIYSKSIMITM 456
           T  M++T  V  G   P    T+ SI+W    T+   +  SSS   S+S ++++
Sbjct: 137 TSTMNSTGSVSGGSVYPTNSTTNSSISW-NSSTSAATNTSSSSSSSSQSSVVSV 189


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +1

Query: 16  PRLVEISS-GQMCSNDKPQKEDCSIDPWTIEGRMKSKVEQELKNMEDLNYTIIRPAIVYG 192
           PR ++ S  G +C++D P+ E C        G +K+         ++    II+ A  +G
Sbjct: 497 PRSLQASQFGMLCTSDTPEGEAC--------GLVKNLALMTHITTDEEEEPIIKLAYAFG 548

Query: 193 IGDRRSLTPRLLYG-GIY 243
           I D   ++ R L+  G Y
Sbjct: 549 IEDIHVISGRELHSHGTY 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,959
Number of Sequences: 5004
Number of extensions: 48449
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)