Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1858X
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0067 + 13144002-13144203,13144471-13144529,13144638-131447... 33 0.19
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 30 0.99
12_02_0352 - 17862577-17863528,17864076-17864827 29 2.3
01_01_1112 + 8808544-8808695,8808818-8808961,8809302-8809380,880... 29 2.3
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 29 3.0
02_05_0515 + 29689259-29689535,29689867-29690209,29690475-296907... 28 4.0
01_05_0796 - 25297792-25298514 28 4.0
06_01_0031 - 305457-305663,306248-306523,306824-307609 28 5.3
04_04_1184 + 31558678-31558707,31559485-31559644,31559732-315603... 28 5.3
03_01_0138 - 1089063-1089266,1089590-1089671,1089937-1090390,109... 28 5.3
02_03_0068 + 14711891-14712418 28 5.3
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 27 7.0
01_03_0055 + 12074512-12076155 27 7.0
12_01_0296 + 2240376-2240580,2241556-2241764,2241847-2241975,224... 27 9.2
>12_02_0067 +
13144002-13144203,13144471-13144529,13144638-13144713,
13144802-13144873,13144969-13145056,13145365-13145601,
13145705-13145910,13145946-13146122,13146220-13146251,
13146330-13146432,13146547-13146815,13148029-13148175,
13148272-13148412,13148509-13148595,13148841-13148931,
13149093-13149192,13149292-13149352,13149442-13149663,
13149756-13149872,13149972-13150061,13150168-13150344
Length = 917
Score = 32.7 bits (71), Expect = 0.19
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 34 SSGQMCSNDK-PQKEDCSIDPWTIEGRMKSKVEQE-LKNMEDLNYTIIRPAIVYG 192
S+G +D P E ++DP + R K K+E E L D+N+T IRP +YG
Sbjct: 702 SAGVYLKSDLLPHFETDAVDP---KSRHKGKLETESLLETRDVNWTSIRPVYIYG 753
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 30.3 bits (65), Expect = 0.99
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 337 SGPVLRPTSRSITWLTKGTALRVHWPSSSLIYSKSI 444
S PV+RP +S+ + +G A+ VH P YS+S+
Sbjct: 1406 SEPVMRPAMKSVALMIEG-AIEVHQPPPPASYSQSL 1440
>12_02_0352 - 17862577-17863528,17864076-17864827
Length = 567
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 111 DEEQSGTRAEKHGGPELHHHKAR 179
D E+ EKHGG HHH++R
Sbjct: 378 DPEEEDDDGEKHGGSYGHHHQSR 400
>01_01_1112 +
8808544-8808695,8808818-8808961,8809302-8809380,
8809477-8809555,8810338-8810377,8810455-8810589,
8810901-8811038,8811596-8811881
Length = 350
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 300 VHVRDVCRAIWTLGTSPQANKQIYNLVDEGNSTQGTLAELVSDIFKINH 446
+HV D+C+AI S ++ ++IYN+VD+ + + + + + H
Sbjct: 237 IHVADICQAI-LASMSIRSARRIYNVVDDDPAPRSEVFAFARSLVERKH 284
>11_05_0100 -
19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = -3
Query: 374 VIDLLVGLRTGPESPDGTTDVADMYRVHFQIASPKEFHCFPKCL 243
V D L G R E DGTTD+ VHF S E C+ L
Sbjct: 433 VSDKLEGFRAAKEYLDGTTDIT--RTVHFGKPSEHEKSCYTAVL 474
>02_05_0515 +
29689259-29689535,29689867-29690209,29690475-29690746,
29691282-29691478,29691874-29692237,29692831-29692898
Length = 506
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 112 MKSKVEQELKNMEDLNYTI-IRPAIVYGIGDRRSLTPRLL 228
+KS Q + YT IRPA +YG G+ R L PR+L
Sbjct: 199 LKSNGRQTKSDKSSRLYTCSIRPAAIYGPGEERHL-PRIL 237
>01_05_0796 - 25297792-25298514
Length = 240
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 105 RSDEEQSGTRAEKHGGPELHHHKARYCVRNRRQKKFDTPSPLRWNLQ 245
RS++ G R + PEL ++ C R RR + S W ++
Sbjct: 139 RSEKVGRGRRPTRAASPELRRSESERCRRRRRSLSSSSASLADWGME 185
>06_01_0031 - 305457-305663,306248-306523,306824-307609
Length = 422
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 343 PVLRPTSRSITWLTKGTALRVHW 411
P RPTSR T++T+ T +V W
Sbjct: 91 PHPRPTSRKCTYVTESTGRKVKW 113
>04_04_1184 +
31558678-31558707,31559485-31559644,31559732-31560394,
31560512-31560956,31561090-31561171,31561319-31561534
Length = 531
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +1
Query: 67 QKEDCSIDPWTIEGRMKSKVEQELKNMEDLNYTIIRPAIVYGIGDRRSLTPRL 225
+KE+ I+ W E K+K+E E+K +E+ + +R + + ++ +T RL
Sbjct: 435 KKEELKIEAW--ESLQKAKIESEMKRIEE-HAEKLRSEAMAKMAEKLEMTRRL 484
>03_01_0138 -
1089063-1089266,1089590-1089671,1089937-1090390,
1091094-1091634
Length = 426
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 67 QKEDCSIDPWTIEGRMKSKVEQELKNME 150
Q+E+ I W E K+K+E E+K ME
Sbjct: 334 QREEVKIQAW--ENHQKAKIEAEMKRME 359
>02_03_0068 + 14711891-14712418
Length = 175
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 96 DDRRSDEEQSGTRAEKHGGPELHHHKARYCVRNRRQKKFDTPSPLRWNL 242
++ + +EE+S R ++G P + R C R P+P R L
Sbjct: 74 EEEKEEEEESPGRRRRNGSPPQEEAQRRRCGRRGGAASSSPPTPRRRGL 122
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 130 VPLCSSSDLRSSKGQLSNLPFGAYHCCTSV 41
+PL SSS + SS G S LP+ A C TS+
Sbjct: 109 IPLSSSSWMWSSLGSWSLLPWMARTCSTSM 138
>01_03_0055 + 12074512-12076155
Length = 547
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 96 DDRRSDEEQSGTRAEK-HGGPELHHHKARYCVRNRRQKKFDTPS 224
DD DE G ++ + +GG +HHH + ++R++ D S
Sbjct: 337 DDDDDDEVGPGMKSRRIYGGHRVHHHHHHHNGHHKRRRGDDVSS 380
>12_01_0296 +
2240376-2240580,2241556-2241764,2241847-2241975,
2242271-2242417,2243045-2243108,2243208-2243311,
2243373-2243411
Length = 298
Score = 27.1 bits (57), Expect = 9.2
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 12/112 (10%)
Frame = +3
Query: 144 HGGPELHHHKARYCVRNRRQKKFDTPSP-------LRWNLQAFRETMKLLWTGDLKMNTV 302
H G EL HH R K +P P L+ RE L + D +N V
Sbjct: 25 HAGGELRHHLVHVAPRRENATKKASPPPSLLAAGFAAGKLRRRREDWSLFTSVDENLNHV 84
Query: 303 HVRDVCRAIWTLGTSPQANKQIY---NLVDEGNSTQGT--LAELVSDIFKIN 443
+ + G + A +Y LVD + TQ + + SD+F N
Sbjct: 85 RTTNHIETCKSTGPNDAAILDLYKETELVDAVHMTQSSSESVQSPSDMFSNN 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,458,127
Number of Sequences: 37544
Number of extensions: 333019
Number of successful extensions: 1015
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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