Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1858X
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64844-2|AAO25987.1|  846|Caenorhabditis elegans Hypothetical pr...    31   0.50 
U64844-1|AAK72092.1|  882|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    28   4.7  
AC025723-13|AAK29939.1|  286|Caenorhabditis elegans Hypothetical...    28   4.7  
AC024809-3|AAF59541.3|  455|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z48334-3|CAA88310.1|  471|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF016449-17|AAG24005.1|  306|Caenorhabditis elegans Hypothetical...    27   6.2  
Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U64844-2|AAO25987.1|  846|Caenorhabditis elegans Hypothetical
           protein T22F3.3b protein.
          Length = 846

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 389 PFVNQVIDLLVGLRTGPESPDGTTDVADMYRVHFQIASPKEFHCF 255
           P + Q+I+ + G    PE PD   D+++M R H +     +F  F
Sbjct: 738 PMLKQIIEQIEGGMFTPEDPDQLKDLSNMLRYHDRFMVCADFDAF 782


>U64844-1|AAK72092.1|  882|Caenorhabditis elegans Hypothetical
           protein T22F3.3a protein.
          Length = 882

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 389 PFVNQVIDLLVGLRTGPESPDGTTDVADMYRVHFQIASPKEFHCF 255
           P + Q+I+ + G    PE PD   D+++M R H +     +F  F
Sbjct: 774 PMLKQIIEQIEGGMFTPEDPDQLKDLSNMLRYHDRFMVCADFDAF 818


>Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical protein
            F59F3.1 protein.
          Length = 1227

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 23/84 (27%), Positives = 37/84 (44%)
 Frame = +3

Query: 132  RAEKHGGPELHHHKARYCVRNRRQKKFDTPSPLRWNLQAFRETMKLLWTGDLKMNTVHVR 311
            R    G  + H +K  Y    R +K  DTP P+RW      E  K     D+    + + 
Sbjct: 1045 RIADFGLSKKHTNKTYY----RTKKSKDTPLPVRWMPLECIEEFKFTQKSDVWSFGICLY 1100

Query: 312  DVCRAIWTLGTSPQANKQIYNLVD 383
            +    I+TLG +P  N   +N+++
Sbjct: 1101 E----IFTLGGTPYPNCDTFNVIE 1120


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 333 TLGTSPQANKQIYNLVDEGNSTQGTLAELV 422
           T G SP+   +IYN +  GN T  TL E+V
Sbjct: 218 TWGVSPEG-AEIYNQIARGNFTTQTLIEIV 246


>AC025723-13|AAK29939.1|  286|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.11 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 111 DEEQSGTRAEKHGGPELHHHKARYCVRNRRQKKFDTPSPLRWNLQAFRETMKL 269
           D E +G    +   PEL     R  V  RR +K   P P  +    F ET++L
Sbjct: 221 DSEDTGAELVE---PELSRILQRTFVVPRRSRKLSVPEPEEYEEDGFSETLEL 270


>AC024809-3|AAF59541.3|  455|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.8 protein.
          Length = 455

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 393 CSLR--QPSYRSACWPEDWSRESRWHDRRRGHV 301
           C+ R  + S +S  W   WSR  RW + +  HV
Sbjct: 6   CTARSFRTSVKSNGWVHKWSRFKRWQEMQAAHV 38


>Z48334-3|CAA88310.1|  471|Caenorhabditis elegans Hypothetical
           protein F10B5.3 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 240 LQAFRETMKLLWTGDLKMNTVHVRDV 317
           L AF+  ++ L+TGD+KM +V   +V
Sbjct: 90  LAAFKVILEALYTGDIKMKSVAANEV 115


>AF016449-17|AAG24005.1|  306|Caenorhabditis elegans Hypothetical
           protein C50H11.17 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 46  MCSNDKPQKEDCSIDPWTIEGRMKSKV--EQELKNMEDLNYTI 168
           +C N+   +ED +  P  I+GR  +     +ELKN E + Y +
Sbjct: 235 LCLNEVKPREDANSFPCFIDGRFHNPQLNTEELKNKECMQYVM 277


>Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical
           protein F56H6.7 protein.
          Length = 797

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 254 GNNETPLDWRSENEH 298
           G+ +TPLDW+ EN H
Sbjct: 90  GDTKTPLDWQLENVH 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,845,865
Number of Sequences: 27780
Number of extensions: 279615
Number of successful extensions: 839
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)