Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1858X
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.63 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   7.7  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = +3

Query: 180 YCVRNRRQKKFDTPSPLRWNLQAFRETMKL 269
           +C +N ++ K+D    + +  + F+ET+++
Sbjct: 337 FCPKNNKELKYDDIKEMEYLDKVFKETLRM 366


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +3

Query: 348 PQANKQIYNLVDEGNSTQGTLAELVSDIFKINHDYYGTAISTLAKNDIASV 500
           P   + IY+ V   N T G   +    IF+   DY   AIS    N I +V
Sbjct: 214 PSDLRTIYSRVRNLNRTHGFPNDAQPYIFQEVIDYGNEAISKREYNGIGAV 264


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 75  RLLN*PLDDRRSDEEQSGTRAEKHGGPELHHH 170
           RL+   L D  +D+E    + ++   PE H H
Sbjct: 677 RLIKRELVDAPADQEGDDDQVDEREYPESHGH 708


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 518 CRWLHRHRRYVVLSQSRN 465
           CR +HR  R VV+S   N
Sbjct: 209 CRTMHRLTRQVVVSSVAN 226


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 518 CRWLHRHRRYVVLSQSRN 465
           CR +HR  R VV+S   N
Sbjct: 209 CRTMHRLTRQVVVSSVAN 226


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -1

Query: 304 CTVFIFRSPVQRSFI 260
           CT+F+F + V+ +F+
Sbjct: 301 CTIFLFAAMVEFAFV 315


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 59  SLLHICPLEI 30
           SLLHIC LE+
Sbjct: 112 SLLHICMLEL 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,534
Number of Sequences: 438
Number of extensions: 3233
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)