Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1857
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 32 0.11
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 29 0.79
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 28 1.8
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 27 2.4
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce... 26 5.6
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 26 5.6
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 5.6
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 26 5.6
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 25 9.7
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 25 9.7
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi... 25 9.7
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -1
Query: 696 NSLNSSAVGLGTSSCISARSLVPSRQSCLLRSSSTPALGSS 574
+S+ +S+ S+ +S+ S++PS S +L SSS A+ SS
Sbjct: 20 SSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSS 60
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 29.1 bits (62), Expect = 0.79
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 240 LQAFRETMKLLWTGDLKMNTVHVRDVCRAIWTLGTSP 350
L++F E KL+W D KM HV + W L P
Sbjct: 519 LESFVEHNKLMWLKDRKMGDGHVYESSALTWPLLLGP 555
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -2
Query: 542 CPPTRSGACRWLLRHRRYVVLSQSRNSGSIVIMID---FEYIRDELGQC 405
C PT RW + + ++ GS ++MID FE +++++G+C
Sbjct: 972 CSPTDRNTFRWTVTALEFAMIM---TYGSNILMIDKKSFEELKEKVGKC 1017
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +3
Query: 336 LGTSPQANKQIYNLVDEGNSTQGTLAELVSDIFKINHDYYGTAISTLAKNDIASVAE 506
LG +PQ ++++ NL+++ + + + +SDI + T I T + VA+
Sbjct: 108 LGPTPQLSRRVLNLLEDMSPIADSHVDQISDIKHNTSEISSTMIPTTPSKNPEPVAQ 164
>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 473 SRNSGSIVIMIDFEYIRDELGQCTLS-AVPFVNQVIDLLVGLRTGPES 333
SR + + ++I D L+ AVPF N+ +DL++ RT P++
Sbjct: 47 SRPGREYFVEVKEDFIEDLFNLTGLNLAVPFYNEALDLILD-RTAPDT 93
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 672 LPPNCSESFRRLCFDATLSQRNFYYD 749
L P C E +LC ++ L+ +N YD
Sbjct: 338 LTPECKEEEFKLCKESLLAHKNSIYD 363
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +3
Query: 684 CSESF--RRLCFDATLSQRNFYYDC 752
C E F R D T+ +R F+YDC
Sbjct: 1357 CGEEFSPRDSFIDCTICERRFHYDC 1381
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 715 SKHSLLKLSEQFGGRFGHVQLHQRAQLGPVET 620
S+++LL L F +FGH++ Q P ET
Sbjct: 2 SENALLALQRHFEDQFGHIEGLQPVSAKPSET 33
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 9.7
Identities = 7/29 (24%), Positives = 20/29 (68%)
Frame = +1
Query: 67 QKEDCSIDPWTIEGRMKSKVEQELKNMED 153
+K+DC +DP+ I+ + ++Q++ +++
Sbjct: 199 EKKDCPMDPFIIDHSKSTFIDQQVLKLQE 227
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 440 DFEYIRDELGQCTLSAVPFVNQVIDLLVGLRTG 342
+F RD L C L VPF+ L L+TG
Sbjct: 795 NFSNYRDCLENCVLPCVPFLGVYFTDLTFLKTG 827
>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 71 FWGLSLLHICPLEISTSLGTFIL 3
FWGL I +++ST LGT +L
Sbjct: 163 FWGLERKPIKGIQLSTKLGTKLL 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,694
Number of Sequences: 5004
Number of extensions: 68550
Number of successful extensions: 211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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