Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1857
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0067 + 13144002-13144203,13144471-13144529,13144638-131447... 33 0.36
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 30 1.9
02_02_0419 - 10009686-10012568 29 3.3
12_02_0352 - 17862577-17863528,17864076-17864827 29 4.4
01_01_1112 + 8808544-8808695,8808818-8808961,8809302-8809380,880... 29 4.4
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 29 5.8
09_06_0261 - 21919017-21920594 28 7.7
02_05_0515 + 29689259-29689535,29689867-29690209,29690475-296907... 28 7.7
01_05_0796 - 25297792-25298514 28 7.7
>12_02_0067 +
13144002-13144203,13144471-13144529,13144638-13144713,
13144802-13144873,13144969-13145056,13145365-13145601,
13145705-13145910,13145946-13146122,13146220-13146251,
13146330-13146432,13146547-13146815,13148029-13148175,
13148272-13148412,13148509-13148595,13148841-13148931,
13149093-13149192,13149292-13149352,13149442-13149663,
13149756-13149872,13149972-13150061,13150168-13150344
Length = 917
Score = 32.7 bits (71), Expect = 0.36
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 34 SSGQMCSNDK-PQKEDCSIDPWTIEGRMKSKVEQE-LKNMEDLNYTIIRPAIVYG 192
S+G +D P E ++DP + R K K+E E L D+N+T IRP +YG
Sbjct: 702 SAGVYLKSDLLPHFETDAVDP---KSRHKGKLETESLLETRDVNWTSIRPVYIYG 753
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 337 SGPVLRPTSRSITWLTKGTALRVHWPSSSLIYSKSI 444
S PV+RP +S+ + +G A+ VH P YS+S+
Sbjct: 1406 SEPVMRPAMKSVALMIEG-AIEVHQPPPPASYSQSL 1440
>02_02_0419 - 10009686-10012568
Length = 960
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = -1
Query: 711 SIVF*NSLNSSAVGLGTSSCISARSLVPSRQSCLL 607
+I+F +L+S+A LG ++ +A + VPS ++ LL
Sbjct: 11 AIIFLTALSSAASALGVAAAAAAAACVPSERAALL 45
>12_02_0352 - 17862577-17863528,17864076-17864827
Length = 567
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 111 DEEQSGTRAEKHGGPELHHHKAR 179
D E+ EKHGG HHH++R
Sbjct: 378 DPEEEDDDGEKHGGSYGHHHQSR 400
>01_01_1112 +
8808544-8808695,8808818-8808961,8809302-8809380,
8809477-8809555,8810338-8810377,8810455-8810589,
8810901-8811038,8811596-8811881
Length = 350
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 300 VHVRDVCRAIWTLGTSPQANKQIYNLVDEGNSTQGTLAELVSDIFKINH 446
+HV D+C+AI S ++ ++IYN+VD+ + + + + + H
Sbjct: 237 IHVADICQAI-LASMSIRSARRIYNVVDDDPAPRSEVFAFARSLVERKH 284
>11_05_0100 -
19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = -2
Query: 374 VIDLLVGLRTGPESPDGTTDVADMYRVHFQIASPKEFHCFPKCL 243
V D L G R E DGTTD+ VHF S E C+ L
Sbjct: 433 VSDKLEGFRAAKEYLDGTTDIT--RTVHFGKPSEHEKSCYTAVL 474
>09_06_0261 - 21919017-21920594
Length = 525
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 567 CWREYLRQMSAHAVRCLSLAPP 502
CWR Y+R RCLSL P
Sbjct: 158 CWRGYVRAAVGDGARCLSLRCP 179
>02_05_0515 +
29689259-29689535,29689867-29690209,29690475-29690746,
29691282-29691478,29691874-29692237,29692831-29692898
Length = 506
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 112 MKSKVEQELKNMEDLNYTI-IRPAIVYGIGDRRSLTPRLL 228
+KS Q + YT IRPA +YG G+ R L PR+L
Sbjct: 199 LKSNGRQTKSDKSSRLYTCSIRPAAIYGPGEERHL-PRIL 237
>01_05_0796 - 25297792-25298514
Length = 240
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 105 RSDEEQSGTRAEKHGGPELHHHKARYCVRNRRQKKFDTPSPLRWNLQ 245
RS++ G R + PEL ++ C R RR + S W ++
Sbjct: 139 RSEKVGRGRRPTRAASPELRRSESERCRRRRRSLSSSSASLADWGME 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,986,874
Number of Sequences: 37544
Number of extensions: 478511
Number of successful extensions: 1603
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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